Integrate with pynbody v2 #701
Workflow file for this run
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| name: Build and Test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.9, "3.10", "3.11", "3.12"] | |
| sqlalchemy-version: ["1.4", "2.0"] | |
| numpy-version: ["1.22", "1.26"] | |
| TANGOS_TESTING_DB_BACKEND: [sqlite, mysql+pymysql, postgresql+psycopg2] | |
| exclude: | |
| - python-version: "3.12" | |
| sqlalchemy-version: "1.4" | |
| - python-version: "3.12" | |
| numpy-version: "1.22" | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| C: gcc-10 | |
| CXX: g++-10 | |
| TANGOS_TESTING_DB_USER: root | |
| TANGOS_TESTING_DB_PASSWORD: root | |
| TANGOS_TESTING_DB_BACKEND: ${{ matrix.TANGOS_TESTING_DB_BACKEND }} | |
| services: | |
| postgres: | |
| image: postgres | |
| env: | |
| POSTGRES_USER: root | |
| POSTGRES_PASSWORD: root | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| # Maps tcp port 5432 on service container to the host | |
| - 5432:5432 | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v2 | |
| - name: Install gcc | |
| run: | | |
| sudo add-apt-repository ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update -qq | |
| sudo apt install gcc-10 g++-10 | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install numpy~=${{ matrix.numpy-version}} sqlalchemy~=${{ matrix.sqlalchemy-version}} | |
| - name: Build and install tangos | |
| run: | | |
| pip install -e .[test,rmdbs] | |
| pip install pytest-random-order | |
| - name: Check that tangos can import without pynbody | |
| run: | | |
| python -c "import tangos" | |
| - name: Install pynbody and yt | |
| run: python -m pip install pynbody yt --no-build-isolation | |
| - name: Set up MySQL | |
| if: ${{ matrix.TANGOS_TESTING_DB_BACKEND == 'mysql+pymysql' }} | |
| run: | | |
| sudo /etc/init.d/mysql start | |
| - name: Run all tests | |
| working-directory: tests | |
| run: python -m pytest -v --random-order-seed=11 |