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fix typo
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ManuelTgn committed Aug 7, 2024
1 parent 4715a30 commit d3e7fe7
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion PostProcess/merge_close_targets_cfd.sh
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ echo "Sorting done in $(($ENDTIME - $STARTTIME)) seconds"
# rm $fileIn.sorted.tmp
echo "Merging contiguous targets"
# python remove_contiguous_samples_cfd.py $fileIn.sorted $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd
python remove_contiguous_samples.py $fileIn $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd $sort_pivot $sorting_criteria_scoring $sorting_criteria
python remove_contiguous_samples_cfd.py $fileIn $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd $sort_pivot $sorting_criteria_scoring $sorting_criteria
# python remove_contiguous_samples_cfd_new.py $fileIn $fileOut $thresh $chrom $position $total $true_guide $snp_info $cfd $sort_pivot $sorting_criteria_scoring $sorting_criteria || {
# echo "CRISPRme ERROR: contigous SNP removal failed (script: ${0} line $((LINENO-1)))" >&2
# exit 1
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