cv_datasources.txt

----------------------------------------------------------------------------

  This document lists the controlled vocabulary used to defined imported data
  (cv_datasources) in neXtProt database

  Release:     07-Nov-2016

  The definition of the CV is provided in the following format:


 -----------   ----------------------------------       -----------------------------
 Line code     Content                                  Occurrence in an entry
 -----------   ----------------------------------       -----------------------------
 ID            Unique identifier                        Once; starts a cv data release entry
 AC            Unique accession (CVDS-xxxx)             Once
 DE            Definition                               Once or more
 DR            Data repository / ftp site where the     Once
 DO            Document (MDATA)                         Once
 //            Terminator                               Once; ends an entry

next id:  CVDS-0112

__________________________________________________________________________
ID   AgBase
AC   CVDS-0040
DE   AgBase is a curated resource for functional analysis of agricultural plant and animal gene products.
DR   http://agbase.msstate.edu/
//
ID   Alzheimers_University_of_Toronto
AC   CVDS-0078
DE   Alzheimers Project at University of Toronto
DR   http://www.ims.utoronto.ca/Page4.aspx
//
ID   Antibodypedia
AC   CVDS-0077
DE   A searchable database of antibodies against human proteins
DR   http://www.antibodypedia.com
//
ID   Bgee
AC   CVDS-0008
DE   Information imported from dataBase for Gene Expression Evolution
DO   MDATA_0038
DR
//
ID   BHF-UCL
AC   CVDS-0041
DE   British Heart Foundation - University College London
DR   http://wiki.geneontology.org/index.php/BHF-UCL
//
ID   CACAO
AC   CVDS-0100
DE   Community Assessment of Community Annotation with Ontologies
DR   http://gowiki.tamu.edu/wiki/index.php/Category:CACAO
//
ID   CCDS
AC   CVDS-0016
DE   Consensus CDS project
DR
//
ID   ClinVar
AC   CVDS-0081
DE   Database of mutations and their clinical relevance
DR   http://www.ncbi.nlm.nih.gov/clinvar/
//
ID   Cosmic
AC   CVDS-0051
DE   Catalogue Of Somatic Mutations In Cancer
DR   http://www.sanger.ac.uk/genetics/CGP/cosmic/
//
ID   DFLAT
AC   CVDS-0042
DE   Developmental FunctionaL Annotation at Tufts
DR   http://dflat.cs.tufts.edu/data.htm
//
ID   dictyBase
AC   CVDS-0043
DE   Dictyostelium discoideum
DR   http://dictybase.org/
//
ID   dbSNP
AC   CVDS-0052
DE   Short genetic variations database
DR   www.ncbi.nlm.nih.gov/SNP/
//
ID   DrugBank
AC   CVDS-0107
DE   Drug and drug target database
DR   http://www.drugbank.ca/
//
ID   Dyp
AC   CVDS-0022
DE   Information extracted form the Dyp database
DO   MDATA_0007
//
ID   EMBL-EBI
AC   CVDS-0006
DE   European Molecular Biology Laboratory / European Bioinformatics Institute
DR
//
ID   Ensembl
AC   CVDS-0003
DE   Information imported from Ensembl
DR   http://www.ensembl.org
//
ID   eVOC
AC   CVDS-0014
DE   Information generated by eVOC ontology
DR
//
ID   FlyBase
AC   CVDS-0059
DE   A database for drosophila genetics and molecular biology.
DR   http://flybase.org/
//
ID   GDB
AC   CVDS-0044
DE   Human Genome Database
DR   http://www.gdb.org
//
ID   GFP-cDNA@EMBL
AC   CVDS-0018
DE   GFP-cDNA Localisation Project (EMBL)
DO   MDATA_0001
//
ID   GO
AC   CVDS-0013
DE   Information generated by Gene Ontology
DR
//
ID   GO_central
AC   CVDS-0097
DE   Reference Genome Annotation Project
DR   http://geneontology.org/page/reference-genome-annotation-project
//
ID   GOC
AC   CVDS-0045
DE   inferred annotations from GO OBO v1.2
DR   http://www.geneontology.org
//
ID   HGNC
AC   CVDS-0046
DE   HUGO Gene Nomenclature Committee
DR   http://www.gene.ucl.ac.uk/nomenclature
//
ID   HPRD
AC   CVDS-0015
DE   Human Protein Reference Database
DR
//
ID   Human protein atlas
AC   CVDS-0005
DE   Expression data imported from Human protein atlas
DR   http://www.proteinatlas.org
DO   MDATA_0005
//
ID   Human protein atlas subcellular localization
AC   CVDS-0057
DE   Subcellular localization data imported from Human protein atlas
DR   http://www.proteinatlas.org
DO   MDATA_0006
//
ID   InterPro
AC   CVDS-0011
DE   Information generated by InterPro
DR
//
ID   IntAct
AC   CVDS-0038
DE   Information generated by IntAct
DR
//
ID   IPI
AC   CVDS-0082
DE   International Protein Index, from EBI, no more maintain
DR
//
ID   KEGG_PTW
AC   CVDS-0024
DE   Link to KEGG pathways
DR
//
ID   LIFEdb
AC   CVDS-0047
DE   LIFEdb
DR   http://www.lifedb.de
//
ID   MDATA_0004_2011
AC   CVDS-0023
DE   Information extracted from the submission MDATA_0004_2011
DO   MDATA_0004
//
ID   MDATA_0023_2012
AC   CVDS-0058
DE   Proteomics information extracted from the submission MDATA_0023_2012
DO   MDATA_0023
//
ID   MDATA_0033_2013
AC   CVDS-0065
DE   Information extracted from the submission MDATA_0033_2013
DO   MDATA_0033
//
ID   MEROPS
AC   CVDS-0095
DE   Information resource for peptidases
DR   http://merops.sanger.ac.uk/
//
ID   MeSH
AC   CVDS-0012
DE   Information generated by Medical Subject Headings
//
ID   MGI
AC   CVDS-0025
DE   Data from the Mouse orthologs database
DR
//
ID   MTBbase
AC   CVDS-0071
DE   Collection and Refinement of Physiological Data on Mycobacterium tuberculosis
DR   http://www.ark.in-berlin.de/Site/MTBbase.html
//
ID   NCBI
AC   CVDS-0017
DE   National Center for Biotechnology Information
DR
//
ID   NCI
AC   CVDS-0079
DE   National Center Institute
DR
//
ID   NextProt
AC   CVDS-0001
DE   Information generated automacally or manually by neXtProt
DR
//
ID   NextProt integration
AC   CVDS-0007
DE   Data integrated by neXtProt from various sources
DR
//
ID   NTNU_SB
AC   CVDS-0054
DE   NTNU_SB ontology
DR   
//
ID   OBO
AC   CVDS-0037
DE   OBO supports community members who are developing and publishing ontologies in the biomedical domain.
DR   http://obofoundry.org/
//
ID   Orphanet
AC   CVDS-0106
DE   Orphanet; a database dedicated to information on rare diseases and orphan drugs
DR   http://www.orpha.net/consor/cgi-bin/home.php?Lng=GB
//
ID   ParkinsonsUK-UCL
AC   CVDS-0076
DE   Parkinsons Disease Gene Ontology Initiative
DR
//
ID   PeptideAtlas
AC   CVDS-0035
DE   Human peptide sequences and identifiers from PeptideAtlas
DR
//
ID   PeptideAtlas human adrenal gland
AC   CVDS-0083
DE   Information generated by PeptideAtlas, project human adrenal gland
DO   MDATA_0052
//
ID   PeptideAtlas human brain
AC   CVDS-0036
DE   Information generated by PeptideAtlas, project human brain
DO   MDATA_0017
//
ID   PeptideAtlas human breast
AC   CVDS-0084
DE   Information generated by PeptideAtlas, project human breast
DO   MDATA_0051
//
ID   PeptideAtlas human digestive system
AC   CVDS-0085
DE   Information generated by PeptideAtlas, project human digestive system
DO   MDATA_0050
//
ID   PeptideAtlas human eye
AC   CVDS-0086
DE   Information generated by PeptideAtlas, project human eye
DO   MDATA_0042
//
ID   PeptideAtlas human female reproductive system
AC   CVDS-0087
DE   Information generated by PeptideAtlas, project human female reproductive system
DO   MDATA_0048
//
ID   PeptideAtlas human heart
AC   CVDS-0088
DE   Information generated by PeptideAtlas, project human heart
DO   MDATA_0043
//
ID   PeptideAtlas human kidney
AC   CVDS-0069
DE   Information generated by PeptideAtlas, project human liver
DO   MDATA_0035
//
ID   PeptideAtlas human liver
AC   CVDS-0070
DE   Information generated by PeptideAtlas, project human liver
DO   MDATA_0036
//
ID   PeptideAtlas human lung
AC   CVDS-0089
DE   Information generated by PeptideAtlas, project human lung
DO   MDATA_0044
//
ID   PeptideAtlas human male reproductive system
AC   CVDS-0090
DE   Information generated by PeptideAtlas, project human male reproductive system
DO   MDATA_0049
//
ID   PeptideAtlas human others
AC   CVDS-0056
DE   Information generated by PeptideAtlas, project human others
DO   MDATA_0022
//
ID   PeptideAtlas human pancreas
AC   CVDS-0091
DE   Information generated by PeptideAtlas, project human pancreas
DO   MDATA_0045
//
ID   PeptideAtlas human plasma
AC   CVDS-0019
DE   Information generated by PeptideAtlas, project human plasma
DO   MDATA_0008
//
ID   PeptideAtlas human spleen
AC   CVDS-0092
DE   Information generated by PeptideAtlas, project human spleen
DO   MDATA_0046
//
ID   PeptideAtlas human urinary bladder
AC   CVDS-0093
DE   Information generated by PeptideAtlas, project human urinary bladder
DO   MDATA_0047
//
ID   PeptideAtlas human urine
AC   CVDS-0055
DE   Information generated by PeptideAtlas, project human urine
DO   MDATA_0021
//
ID   PeptideAtlas human phosphoproteome
AC   CVDS-0104
DE   Information generated by PeptideAtlas, project human phosphoproteome
//
ID   PhosphoSite
AC   CVDS-0096
DE   Information resource for protein phosphorylation
DR   http://www.phosphosite.org
//
ID   PINC
AC   CVDS-0048
DE   Proteome Inc.
DR
//
ID   PIR
AC   CVDS-0009
DE   Protein Information Resource
DR
//
ID   PMID_18614565
AC   CVDS-0034
DE   Information extracted from the PubMed publication 18614565
DO   MDATA_0013
//
ID   PMID_19413330
AC   CVDS-0075
DE   Information extracted from the PubMed publication 19413330
DO   MDATA_0025
//
ID   PMID_19608861
AC   CVDS-0032
DE   Information extracted from the PubMed publication 19608861
DO   MDATA_0011
//
ID   PMID_20068231
AC   CVDS-0026
DE   Information extracted from the PubMed publication 20068231
DO   MDATA_0016
//
ID   PMID_20140087
AC   CVDS-0029
DE   Information extracted from the PubMed publication 20140087
DO   MDATA_0009
//
ID   PMID_20570859
AC   CVDS-0020
DE   Information extracted from the PubMed publication 20570859
DO   MDATA_0002
//
ID   PMID_20687582
AC   CVDS-0031
DE   Information extracted from the PubMed publication 20687582
DO   MDATA_0010
//
ID   PMID_20797634
AC   CVDS-0030
DE   Information extracted from the PubMed publication 20797634
DO   MDATA_0014
//
ID   PMID_20972266
AC   CVDS-0027
DE   Information extracted from the PubMed publication 20972266
DO   MDATA_0012
//
ID   PMID_21139048
AC   CVDS-0028
DE   Information extracted from the PubMed publication 21139048
DO   MDATA_0015
//
ID   PMID_21406692
AC   CVDS-0021
DE   Information extracted from the PubMed publication 21406692
DO   MDATA_0003
//
ID   PMID_21645671
AC   CVDS-0033
DE   Information extracted from the PubMed publication 21645671
DO   MDATA_0018
//
ID   PMID_21890473
AC   CVDS-0074
DE   Information extracted from the PubMed publication 21890473
DO   MDATA_0020
//
ID   PMID_22148984
AC   CVDS-0060
DE   Information extracted from the PubMed publication 22148984
DO   MDATA_0026
//
ID   PMID_22199227
AC   CVDS-0061
DE   Information extracted from the PubMed publication 22199227
DO   MDATA_0027
//
ID   PMID_22468782
AC   CVDS-0062
DE   Information extracted from the PubMed publication 22468782
DO   MDATA_0028
//
ID   PMID_22865923
AC   CVDS-0063
DE   Information extracted from the PubMed publication 22865923
DO   MDATA_0024
//
ID   PMID_23236377
AC   CVDS-0073
DE   Information extracted from the PubMed publication 23236377
DO   MDATA_0034
//
ID   PMID_23312004
AC   CVDS-0064
DE   Information extracted from the PubMed publication 23312004
DO   MDATA_0029
//
ID   PMID_23584533
AC   CVDS-0066
DE   Information extracted from the PubMed publication 23584533
DO   MDATA_0030
//
ID   PMID_23153008
AC   CVDS-0067
DE   Information extracted from the PubMed publication 23153008
DO   MDATA_0031
//
ID   PMID_23266961
AC   CVDS-0068
DE   Information extracted from the PubMed publication 23266961
DO   MDATA_0032
//
ID   PMID_24129315
AC   CVDS-0080
DE   Information extracted from the PubMed publication 24129315
DO   MDATA_0039
//
ID   PMID_25218447
AC   CVDS-0099
DE   Information extracted from the PubMed publication 25218447
DO   MDATA_0053
//
ID   PMID_23955771
AC   CVDS-0102
DE   Information extracted from the PubMed publication 23955771
DO   MDATA_0054
//
ID   PMID_25038526
AC   CVDS-0103
DE   Information extracted from the PubMed publication 25038526
DO   MDATA_0055
//
ID   Prosite
AC   CVDS-0010
DE   Information generated by Prosite
DR
//
ID   PubMed
AC   CVDS-0004
DE   Information imported from PubMed
DR
//
ID   Reactome
AC   CVDS-0105
DE   Reactome - a knowledgebase of biological pathways and processes
DR   http://www.reactome.org/
//
ID   RefGenome
AC   CVDS-0049
DE   GO Consortium Reference Genomes project
DR   http://www.geneontology.org/GO.refgenome.shtml
//
ID   Roslin_Institute
AC   CVDS-0050
DE   Roslin Institute
DR   http://rgd.mcw.edu
//
ID   SGD
AC   CVDS-0098
DE   Saccharomyces Genome Database
DR   http://www.yeastgenome.org/
//
ID   SRMAtlas
AC   CVDS-0094
DE   Human peptide sequences and identifiers from SRMAtlas
DR
//
ID   String
AC   CVDS-0039
DE   Information generated by String
DR
//
ID   SYSCILIA_CCNET
AC   CVDS-0101
DE   A systems biology approach to dissect cilia function. Imported from GOA.
DR   http://syscilia.org/
//
ID   Uniprot
AC   CVDS-0002
DE   Information imported from Uniprot
DR   http://www.uniprot.org
//
ID   UniPathway
AC   CVDS-0053
DE   A resource for the exploration of metabolic pathways
DR   http://www.grenoble.prabi.fr/obiwarehouse/unipathway
//
ID   WormBase
AC   CVDS-0072
DE   A comprehensive resource for genetics, genomics and biology of C. elegans and related nematodes
DR   http://http://www.wormbase.org
//
ID   PRO
AC   CVDS-0108
DE   Protein Ontology, a unique database resource for species-specific protein complexes
DR   https://omictools.com/protein-ontology-tool
//
ID   PhosphoSitePlus
AC   CVDS-0109
DE   A protein modification resource
DR   http://www.phosphosite.org/homeAction.action
//
ID   iPTMnet
AC   CVDS-0110
DE   A bioinformatics resource for integrated understanding of protein post-translational modifications (PTMs) in systems biology context.
DR   http://research.bioinformatics.udel.edu/iptmnet/
//
ID   PubTator
AC   CVDS-0111
DE   A Web-based tool for accelerating manual literature curation through the use of advanced text-mining techniques
DR   https://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/guest2.cgi
//