print user hmm parameter to stdout

oschwengers · Sep 24, 2024 · 4029e04 · 4029e04
1 parent c7046ab
commit 4029e04
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/bakta/main.py b/bakta/main.py
@@ -62,9 +62,10 @@ def main():
         print('Options and arguments:')
         print(f'\tinput: {cfg.genome_path}')
         print(f"\tdb: {cfg.db_path}, version {cfg.db_info['major']}.{cfg.db_info['minor']}, {cfg.db_info['type']}")
-        if(cfg.user_proteins): print(f'\tuser proteins: {cfg.user_proteins}')
-        if(cfg.replicons): print(f'\treplicon table: {cfg.replicons}')
         if(cfg.prodigal_tf): print(f'\tprodigal training file: {cfg.prodigal_tf}')
+        if(cfg.replicons): print(f'\treplicon table: {cfg.replicons}')
+        if(cfg.user_proteins): print(f'\tuser proteins: {cfg.user_proteins}')
+        if(cfg.user_hmms): print(f'\tuser hmms: {cfg.user_hmms}')
         print(f'\toutput: {cfg.output_path}')
         if(cfg.force): print(f'\tforce: {cfg.force}')
         print(f'\ttmp directory: {cfg.tmp_path}')