Repositories list

• sparql-editor

  Public
  💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

  sparqlsparql-querysparql-query-builder+ 2sparql-editoryasgui

  TypeScript

  •

  MIT License

  •0•4•4•0•Updated Nov 25, 2024Nov 25, 2024

• statistics-and-machine-learning-training

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •7•20•0•0•Updated Nov 25, 2024Nov 25, 2024

• cancer-variants-training

  Public
  Dockerfile

  •

  Creative Commons Attribution 4.0 International

  •2•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• NGS-introduction-training

  Public
  SIB course that introduces analysis of NGS data

  trainingtutorialcourse+ 2teachingngs-analysis

  Shell

  •

  Creative Commons Attribution 4.0 International

  •12•15•4•0•Updated Nov 25, 2024Nov 25, 2024

• single-cell-python-training

  Public
  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•1•0•0•Updated Nov 24, 2024Nov 24, 2024

• spatial-transcriptomics-training

  Public
  R

  •

  Creative Commons Attribution 4.0 International

  •1•2•1•0•Updated Nov 24, 2024Nov 24, 2024

• glittr-stats

  Public
  General statistics of Glittr.org. Comes with the manuscript.

  PostScript

  •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• sparql-examples-utils

  Public
  A tool to maintain and test your SPARQL examples

  qualitysparqlrdf

  Java

  •

  Other

  •10•4•13•2•Updated Nov 23, 2024Nov 23, 2024

• kgsteward

  Public
  Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)

  Python

  •

  GNU General Public License v3.0

  •2•5•0•1•Updated Nov 23, 2024Nov 23, 2024

• sparql-llm

  Public
  🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

  sparqlsparql-query-builderexpasy+ 1llm

  Jupyter Notebook

  •

  MIT License

  •1•7•1•0•Updated Nov 22, 2024Nov 22, 2024

• sendcrypt

  Public
  Modern and easy to use client to securely send encrypted sensitive data by SFTP. Linux, MacOS, and Windows.

  encryptionsftp-clientopenpgp+ 2sibsendcrypt

  TypeScript

  •

  MIT License

  •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• intermediate-python-training

  Public
  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •26•63•4•1•Updated Nov 21, 2024Nov 21, 2024

• intermediate-machine-learning-training

  Public
  Intermediate Machine Learning course of the Swiss Institute of Bioinformatics

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •0•1•3•0•Updated Nov 21, 2024Nov 21, 2024

• pytorch-practical-training

  Public
  pratrical crash course on pytorch by reproducing some published biology-related deep-learning models

  bioinformaticsdeep-learningpytorch+ 1training-materials

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •3•14•0•0•Updated Nov 21, 2024Nov 21, 2024

• glittr

  Public
  A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

  PHP

  •

  MIT License

  •1•35•3•0•Updated Nov 20, 2024Nov 20, 2024

• introduction-to-git

  Public
  Introduction to Git course

  0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• training-collection

  Public
  Collection of bioinformatics training materials

  Python

  •

  Other

  •182•982•1•0•Updated Nov 17, 2024Nov 17, 2024

• pwmscan

  Public
  A Web-based genome-wide Position Weight Matrix (PWM) Scanner

  C

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• queryLibrary

  Public
  Collection of OMOP predefined queries.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• sparql-examples-template

  Public template
  Template repository for your sparql-examples project

  HTML

  •

  Other

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• dsQueryLibraryServer

  Public
  R

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• epinorm

  Public
  Scripts for processing of disease outbreak records as part of the MOOD project.

  Python

  •0•2•1•0•Updated Nov 6, 2024Nov 6, 2024

• sparql-training

  Public
  This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.

  Jupyter Notebook

  •4•8•0•0•Updated Nov 4, 2024Nov 4, 2024

• sparql-examples

  Public
  A set of SPARQL examples that are used in different SIB resources

  HTML

  •

  Other

  •10•9•5•2•Updated Nov 1, 2024Nov 1, 2024

• single-cell-training

  Public
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline

  bioinformaticstutorialrna-seq+ 3courseteachingsingle-cell

  R

  •

  Creative Commons Attribution 4.0 International

  •37•78•2•0•Updated Nov 1, 2024Nov 1, 2024

• opal-docker-sib

  Public
  Shell

  •0•1•0•0•Updated Nov 1, 2024Nov 1, 2024

• pyrheadb

  Public
  Repository for the Python package intended to facilitate access to Rhea data from Python

  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

• containers-snakemake-training

  Public
  Course website "Introduction to Containers and Snakemake for Reproducible Research"

  Dockerfile

  •

  Creative Commons Attribution 4.0 International

  •14•5•0•0•Updated Oct 28, 2024Oct 28, 2024

• immunology-in-bioinformatics-training

  Public
  HTML

  •

  Creative Commons Attribution 4.0 International

  •3•1•0•0•Updated Oct 24, 2024Oct 24, 2024

• containers-introduction-training

  Public
  Course website "Docker and Singularity for reproducible research: getting started with containers"

  trainingdockerdockerfile+ 4tutorialcontainerssingularityteaching

  HTML

  •

  Creative Commons Attribution 4.0 International

  •14•29•1•0•Updated Oct 21, 2024Oct 21, 2024