Scientific Filesystem

All

15 repositories

sci-f.github.io
Public
The Scientific Filesystem Specification and Documentation
science containers singularity reproducibility singularity-containers competitive
CSS
•
GNU Affero General Public License v3.0
•6•12•4•0•Updated Nov 9, 2023Nov 9, 2023
snakemake.scif
Public
Tutorial with snakemake and Scientific Filesystem
snakemake scif scientific-filesystem
HTML
•4•16•1•0•Updated Nov 11, 2020Nov 11, 2020
builder
Public
a template ready to go to easily build, test, and deploy reproducible SCIF containers!
docker builder reproducibility scif scientific-filesystem
Dockerfile
•7•1•0•0•Updated Sep 16, 2020Sep 16, 2020
scif-go
Public
golang implementation of the Scientific Filesystem
golang scif scientific-filesystem
Go
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Mozilla Public License 2.0
•0•6•3•0•Updated Jun 5, 2020Jun 5, 2020
apps
Public
Modular application recipes for the Scientific Filesystem (SCIF)
apps singularity open-science singularity-container singularity-containers scientific-containers sci-f
CSS
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BSD 3-Clause "New" or "Revised" License
•3•3•5•0•Updated Apr 10, 2020Apr 10, 2020
tob
Public
Technical Oversight Board (TOB)
50•0•0•0•Updated Apr 3, 2019Apr 3, 2019
nextflow-scif
Public
This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.
docker nextflow singularity scif
HTML
•2•0•0•0•Updated Aug 4, 2018Aug 4, 2018
jobmaker.scif
Public
An example container with modules to run an executable in different environments / with different job managers
Makefile
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BSD 3-Clause "New" or "Revised" License
•0•4•0•0•Updated Jan 26, 2018Jan 26, 2018
metrics.scif
Public
an example scientific filesystem to provide custom metrics and helpers for a container
time singularity strace scif scientific-filesystem lolcow
Shell
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BSD 3-Clause "New" or "Revised" License
•0•4•0•0•Updated Jan 26, 2018Jan 26, 2018
hello-world.scif
Public
A hello world example for a scientific filesystem
GNU Affero General Public License v3.0
•1•7•0•0•Updated Jan 24, 2018Jan 24, 2018
container.scif
Public
example scientific filesystem to assess metrics across different solutions to a single problem, printing "Hello World"
singularity singularity-container scif scientific-filesystem
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 21, 2018Jan 21, 2018
scientific-example.scif
Public
an example variant calling scientific workflow with the standard container integration format (SCI-F)
Shell
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BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Sep 25, 2017Sep 25, 2017
flavours-of-physics.scif
Public
containers-ftw version of https://www.kaggle.com/c/flavours-of-physics
competition containers physics singularity-containers tau mu containers-ftw
Python
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MIT License
•0•0•0•0•Updated Sep 18, 2017Sep 18, 2017
cftw
Public archive
ctfw (containers for the win) is a base python module for competitive containers
science containers singularity collaborative crowd-sourcing
Python
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MIT License
•2•1•2•0•Updated Sep 4, 2017Sep 4, 2017
demo-ftw
Public archive
demo / testing for containers ftw framework, testing building and running on CI
Python
•
MIT License
•0•0•0•0•Updated Jun 20, 2017Jun 20, 2017