Repositories list

• project-template

  Public template
  Template repository for reproducible research.

  Dockerfile

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  MIT License

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• capture

  Public
  CAPTURE (Custom Analysis Pipelines Tailored for Universal Reproducibility and Efficiency) is a framework and command line interface (CLI) for computational science.

  Shell

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  MIT License

  •0•1•1•0•Updated Nov 20, 2024Nov 20, 2024

• Journalistics

  Public
  Guides and resources from 2024 Journalistics Club in the Lasseigne Lab

  MIT License

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• CoSIA

  Public
  Cross Species Investigation and Analysis : an R package that provides an alternative framework for cross-species transcriptomic comparison of non-diseased wild-type RNA sequencing gene expression data across tissues and species through visualization of variability, diversity, and specificity metrics.

  R

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  MIT License

  •0•5•4•0•Updated Oct 18, 2024Oct 18, 2024

• CoSIAdata

  Public
  ExperimentHub package for CoSIA

  R

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  MIT License

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• 230418_TS_AgingCCC

  Public
  This repo accompanies the Soelter et al., 2024 pre-print "Evaluation of altered cell-cell communication between glia and neurons in the hippocampus of 3xTg-AD mice at two time points"

  R

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  MIT License

  •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

• Setbp1_Alternative_Splicing_Shiny

  Public
  Shiny App for our 2024 manuscript, Cerebral cortex cell-type specific alternative splicing in a Schinzel-Giedion Syndrome patient variant mouse model

  R

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  MIT License

  •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• tc_YoderSC

  Public
  Dockerfile

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  MIT License

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• 230926_EJ_Setbp1_AlternativeSplicing

  Public
  This repository is for our 2024 manuscript, Cell-type-specific alternative splicing in the cerebral cortex of a Schinzel-Giedion Syndrome patient variant mouse model

  alternative-splicingtranscriptomicssingle-cell+ 1rare-disease

  R

  •0•1•0•0•Updated Jul 1, 2024Jul 1, 2024

• 230227_EJ_MouseBrainIsoDiv

  Public
  This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.

  neurosciencegene-expressionrnaseq+ 6alternative-splicingnanopore-sequencinglong-read-sequencingisoform-diversitygenomics-analysissex-differences

  R

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  MIT License

  •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

• labwebsite

  Public
  HTML

  •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

• 230313_TS_CCCinHumanAD

  Public
  This repo accompanies the Soelter et al., 2024 manuscript "Altered Glia-Neuron Communication in Alzheimer’s Disease Affects WNT, p53, and NFkB Signaling Determined by snRNA-seq"

  alzheimers-diseaseneurodegenerative-diseasescell-cell-communication

  R

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  MIT License

  •1•1•0•0•Updated Jun 12, 2024Jun 12, 2024

• gbm_collab

  Public
  GBM collaboration analysis with Sam and Anita

  MIT License

  •0•0•0•0•Updated May 10, 2024May 10, 2024

• pkd_drugrepurposing

  Public
  Drug repurposing analyses using gene signature reversion for PKD

  HTML

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  MIT License

  •0•0•0•0•Updated Jan 29, 2024Jan 29, 2024

• 230323_JW_DiseaseNetworks

  Public
  R

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  MIT License

  •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• 230227_JW_Setbp1Manuscript

  Public
  Framework for investigation of cell-type-specific regulation and expression in rare disease

  mendelian-geneticsnetwork-biologytranslational-research+ 3rare-diseasesingle-nuclei-rna-sequencinggenomics-analysis

  R

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  MIT License

  •1•0•0•0•Updated Dec 5, 2023Dec 5, 2023

• gtex_tf_activity

  Public
  This repository contains all of the code for the GTEx TF Activity Shiny Application

  R

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  MIT License

  •0•0•0•0•Updated Dec 3, 2023Dec 3, 2023

• 230321_JLF_Sex_bias_adverse_events

  Public
  Sex-bias adverse event project

  HTML

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  MIT License

  •1•0•0•0•Updated Oct 15, 2023Oct 15, 2023

• RProjectTemplate

  Public
  R

  •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

• CINmetrics_Cancer_Analysis

  Public
  Comparing chromosomal instability metrics from the

  R

  •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• Cancer_Signature_Reversion

  Public
  HTML

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  MIT License

  •0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

• CoSIA_Shiny_App

  Public
  A ShinyApp for CoSIA

  R

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  MIT License

  •0•0•5•0•Updated Jul 19, 2023Jul 19, 2023

• Transfer_Learning_R03

  Public
  For the R03

  HTML

  •0•0•0•0•Updated Jul 19, 2023Jul 19, 2023

• modelselection

  Public
  R

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  MIT License

  •0•0•0•1•Updated Jun 15, 2023Jun 15, 2023

• CodeReviewUtils

  Public
  Functions used to compare outputs during code review in the Lasseigne lab

  R

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  MIT License

  •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023

• CINmetrics

  Public
  CINmetrics R package

  R

  •0•7•0•0•Updated Mar 20, 2023Mar 20, 2023

• sirolimustargets

  Public
  0•0•0•0•Updated Feb 13, 2023Feb 13, 2023

• TFEA_Lasseigne_Lab_Brownlee

  Public
  0•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• seekRx

  Public
  What the Package Does (One Line, Title Case)

  R

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  Other

  •0•0•0•1•Updated Feb 22, 2022Feb 22, 2022