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@flyconnectome Drosophila Connectomics group

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    27 repositories

    • 2023neckconnective

      Public
      Analysis to support the Neck Connective paper combining FAFB, FANC and MANC neck connective neurons
      0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • bigclust

      Public
      Tools to visualize and annotate big clusterings
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 2, 2024Dec 2, 2024

    • cocoa

      Public
      Comparative Connectomics for Python
      clusteringneuronsneurobiologyconnectomicscelltypes
      Python
      •
      GNU General Public License v3.0
      •1•3•1•0•Updated Nov 26, 2024Nov 26, 2024

    • bancr

      Public
      An R package for querying data in the BANC dataset
      R
      •
      GNU General Public License v3.0
      •1•1•3•0•Updated Nov 26, 2024Nov 26, 2024

    • crantr

      Public
      R Client Access to Clonal Raider ANT (CRANT) Datasets
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • dvid_tools

      Public
      Python tools to query a DVID server
      Python
      •
      GNU General Public License v3.0
      •1•0•2•1•Updated Nov 8, 2024Nov 8, 2024

    • flywire_annotations

      Public
      Supplemental data for Schlegel et al. (2024)
      Jupyter Notebook
      •1•20•0•0•Updated Oct 3, 2024Oct 3, 2024

    • coding-club

      Public
      File sharing for the tracers' R club
      Jupyter Notebook
      •2•6•0•0•Updated Sep 26, 2024Sep 26, 2024

    • fancr

      Public
      Support Acccess to the Female Adult Nerve Cord (FANC) Dataset
      rneurosciencedrosophilaneuroanatomydrosophila-brainsnatverse
      R
      •
      GNU General Public License v3.0
      •1•2•1•1•Updated Sep 4, 2024Sep 4, 2024

    • ol_annotations

      Public
      Annotations for Drosophila Optic Lobe neurons linking the FAFB-FlyWire and Male CNS Optic Lobe datasets
      R
      •0•2•0•0•Updated Jun 17, 2024Jun 17, 2024

    • hi-mc-examples

      Public
      Data & code for the HI-MC project
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 15, 2024Jun 15, 2024

    • hemibrain_olf_data

      Public
      Summary data on identified FIB hemibrain neurons including olfactory PNs
      R
      •
      MIT License
      •0•1•6•0•Updated Dec 21, 2022Dec 21, 2022

    • nblast-scoremats

      Public
      Collection of scoring matrices for NBLAST
      morphologysimilarityneuronscoresnblast
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 8, 2022Aug 8, 2022

    • tools

      Public
      Overview of neuroscience tools developed in the Fly Connectomics group (University of Cambridge) and the Jefferis lab (MRC-LMB)
      rtoolsneurosciencemorphometricsneuroanatomypython
      0•1•0•0•Updated May 25, 2022May 25, 2022

    • 2020hemibrain_examples

      Public
      Code examples for Schlegel, Bates et al. (2020)
      GNU General Public License v3.0
      •4•4•0•0•Updated Nov 21, 2021Nov 21, 2021

    • ALPN_crossmatching

      Public
      Data and code snippets for cross-matching olfactory PNs between FAFB (left + right) and hemibrain
      Jupyter Notebook
      •0•1•1•0•Updated Mar 9, 2021Mar 9, 2021

    • hnf

      Public
      Documentation for the hierarchical neuron format
      dataskeletonstorageannotationsmeshhdf5neuronsdotprops
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 15, 2021Feb 15, 2021

    • flyconnectome

      Public
      Profile repository
      0•2•0•0•Updated Jul 13, 2020Jul 13, 2020

    • CloudVolumeServer

      Public
      Flask application to serve data via CloudVolume
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•2•0•0•Updated May 21, 2020May 21, 2020

    • tracerutils

      Public
      R tools for EM tracers
      neuroscienceconnectomicsneuroanatomy-toolbox
      R
      •
      GNU General Public License v3.0
      •1•0•9•0•Updated Apr 20, 2020Apr 20, 2020

    • neuprint-python

      Public
      Python client utilties for interacting with the neuPrint connectome analysis service
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•0•0•0•Updated Jan 20, 2020Jan 20, 2020

    • catbot

      Public
      Slack bot to interface with CATMAID server, NBLAST and Zotero
      Python
      •
      GNU General Public License v3.0
      •1•5•11•0•Updated Dec 16, 2019Dec 16, 2019

    • fafbseg-py-media

      Public
      Repository for fafbseg-py media
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 22, 2019Sep 22, 2019

    • Install_instructions

      Public
      Repo for install instructions for various software and various machine types.
      0•0•0•0•Updated May 11, 2019May 11, 2019

    • rmushroom

      Public
      R
      •1•0•0•0•Updated Sep 25, 2018Sep 25, 2018

    • temca2data

      Public
      Public code for Zheng, Lauritzen et al. (2017)
      R
      •
      MIT License
      •2•0•0•0•Updated May 11, 2018May 11, 2018

    • catmaid_server_tests

      Public
      testing latency of image server
      Shell
      •0•0•0•0•Updated Nov 29, 2016Nov 29, 2016