carpentries-incubator

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179 repositories

carpentries-incubator.org
Public
HTML
•7•6•3•1•Updated Nov 25, 2024Nov 25, 2024
R-help-reprexes
Public
A lesson on getting unstuck in R, debugging, making reproducible examples (for biologists)
debugging r minimal reproducible example help english lesson pre-alpha reprex
R
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Other
•1•3•23•2•Updated Nov 23, 2024Nov 23, 2024
bioc-scrnaseq
Public
Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.
rna-seq r english bioconductor lesson single-cell pre-alpha carpentries-incubator
R
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Other
•1•2•11•0•Updated Nov 22, 2024Nov 22, 2024
julia-novice
Public
A lesson exploring the Julia language
programming julia julia-language alpha carpentries-incubator lesson
Julia
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Other
•23•16•13•0•Updated Nov 21, 2024Nov 21, 2024
advanced-git
Public
Advanced Git Version Control
git english lesson pre-alpha carpentries-incubator
HTML
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Other
•7•3•14•0•Updated Nov 21, 2024Nov 21, 2024
intro-to-modern-fortran
Public
Introduction to Modern Fortran
programming fortran english lesson pre-alpha carpentries-incubator
R
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Other
•5•15•10•4•Updated Nov 20, 2024Nov 20, 2024
fair-explainable-ml
Public
Fair and explainable ML workshop
python machine-learning ai ml pytorch artificial-intelligence trustworthy-machine-learning trustworthy-ai
Jupyter Notebook
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Other
•5•3•0•0•Updated Nov 20, 2024Nov 20, 2024
ml4bio-workshop
Public
Materials for a workshop introducing machine learning to biologists
education english lesson alpha carpentries-incubator machine-learning
Jupyter Notebook
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Other
•9•21•59•1•Updated Nov 19, 2024Nov 19, 2024
python-humanities-lesson
Public
Python for Humanities
programming english lesson alpha digital-humanities carpentries carpentries-incubator python
Other
•7•13•5•0•Updated Nov 19, 2024Nov 19, 2024
medical-image-processing
Public
Medical Image Processing with Python
python image-processing english lesson radiology pre-alpha pathology carpentries-incubator
Other
•0•3•11•4•Updated Nov 19, 2024Nov 19, 2024
targets-workshop
Public
Pre-alpha {targets} workshop
r reproducible-research english lesson pre-alpha
R
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Other
•8•33•23•6•Updated Nov 19, 2024Nov 19, 2024
bioc-project
Public
Introduction to the Bioconductor project
r bioconductor hacktoberfest pre-alpha life-sciences carpentries-incubator english lesson
R
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Other
•15•18•6•1•Updated Nov 19, 2024Nov 19, 2024
CarpentriesOffline_Instructor_Onboarding
Public
Workbench version of CarpentriesOffline Instructor Onboarding
raspberry-pi english lesson pre-alpha carpentries-incubator carpentriesoffline
Other
•1•1•7•21•Updated Nov 19, 2024Nov 19, 2024
SDC-BIDS-EEG-EEGLAB
Public
Working with EEGLAB and BIDS-EEG
programming matlab eeg english eeg-signals neuroimaging eeg-data bids pre-alpha eeg-analysis
Other
•2•1•1•0•Updated Nov 19, 2024Nov 19, 2024
docker-introduction
Public
Reproducible Computational Environments using Containers
education containers beta english lesson hacktoberfest carpentries-incubator docker carpentries
Python
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Other
•49•50•36•6•Updated Nov 19, 2024Nov 19, 2024
singularity-introduction
Public
An introduction to singularity
containers english alpha carpentries-incubator singularity lesson
Python
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Other
•18•12•10•0•Updated Nov 19, 2024Nov 19, 2024
github-without-command-line
Public
A lesson to teach GitHub Without Command Line
github english lesson pre-alpha
Other
•1•4•0•0•Updated Nov 19, 2024Nov 19, 2024
bioc-rnaseq
Public
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
r bioconductor rna-seq-analysis hacktoberfest pre-alpha life-sciences bulk-rna-seq carpentries-incubator english lesson
R
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Other
•33•21•20•2•Updated Nov 19, 2024Nov 19, 2024
encode-data-exploration
Public
Biological Data Exploration with ENCODE
biology english encode lesson data-exploration pre-alpha carpentries-incubator
Other
•0•0•0•35•Updated Nov 19, 2024Nov 19, 2024
SDC-BIDS-dMRI
Public
Introduction to dMRI
programming neuroimaging dwi fsl pre-alpha diffusion-mri tractography ants dipy carpentries-incubator
Jupyter Notebook
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Other
•18•24•22•2•Updated Nov 19, 2024Nov 19, 2024
machine-learning-reinforcement-python
Public
Reinforcement learning in Python
python machine-learning reinforcement-learning english lesson pre-alpha carpentries-incubator
Other
•0•0•0•1•Updated Nov 19, 2024Nov 19, 2024
lesson-gpu-programming
Public
GPU Programming with Python and CUDA.
python gpu beta cuda numba cupy parallel-programming carpentries-incubator lesson-gpu-programming programming
R
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Other
•13•23•16•0•Updated Nov 19, 2024Nov 19, 2024
python-modeling-power-consumption
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Modeling Time Series Data for Engineers
python engineering scikit-learn sklearn pandas english lesson power-consumption pre-alpha carpentries-incubator
Other
•1•2•0•1•Updated Nov 19, 2024Nov 19, 2024
statistical-probabilistic-programming-r
Public
Introduction to Probabilistic Programming
r bayesian-methods probabilistic-programming lesson stan pre-alpha
R
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Other
•6•6•0•2•Updated Nov 19, 2024Nov 19, 2024
fair-data-management-agriculture
Public
FAIR Data Management for Long-term Agriculture Experiments
english lesson data-management pre-alpha agriculture-research fair-data carpentries-incubator
Other
•0•3•0•1•Updated Nov 19, 2024Nov 19, 2024
mgnify-metagenomics
Public
Managing and Retrieving Metagenomics Data with MGnify
english lesson pre-alpha
Other
•0•0•0•1•Updated Nov 19, 2024Nov 19, 2024
scientific-metadata
Public
Introduction to the Fundamentals of Scientific Metadata
markdown metadata json xml english lesson pre-alpha carpentries-incubator
Other
•1•8•0•1•Updated Nov 19, 2024Nov 19, 2024
HPC-workflow-lesson-maestro
Public
HPC Workflow Management with Maestro
english lesson workflows pre-alpha maestrowf carpentries-incubator hpc-carpentry
Python
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Other
•2•1•0•0•Updated Nov 19, 2024Nov 19, 2024
fair-for-busy-biologists
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A short course on FAIR and data managment for biomedical research
Other
•0•1•0•0•Updated Nov 19, 2024Nov 19, 2024
lesson-R-packaging
Public
R Packaging
r best-practices beta lesson-materials lessons-page lesson
Other
•10•5•21•1•Updated Nov 19, 2024Nov 19, 2024