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    16 repositories

    • LLSM

      Public
      Lattice Light-Sheet Microscope Pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•8•7•0•Updated Nov 8, 2024Nov 8, 2024

    • visitor-kerney

      Public
      Analysis scripts developed for the Kerney project
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • SiMView

      Public
      Code for processing SiMView data collected at the AIC
      MATLAB
      •0•2•1•0•Updated Oct 16, 2023Oct 16, 2023

    • visitor-patapoutian

      Public
      iPALM | "Visualizing mechanically activated PIEZO channels"
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • iPALM-beadRemoval

      Public
      Automatic removal of beads from iPALM localization data
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • smlm_datafusion3d_iPALM

      Public
      Software for 3D particle averaging of SMLM data adapted for iPALM data
      MATLAB
      •
      Apache License 2.0
      •3•0•0•0•Updated Aug 29, 2022Aug 29, 2022

    • hmm-bayes

      Public
      HMM-Bayes is a single particle tracking software intended to identify switching between diffusive and directed motion states
      MATLAB
      •
      Other
      •0•1•1•0•Updated May 27, 2022May 27, 2022

    • iPALM_mask

      Public
      iPALM | "Distinct actin filament populations in focal adhesions"
      MATLAB
      •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

    • MFM

      Public
      Matlab Code for processing and analysis of aberration corrected multifocal microscopy data
      MATLAB
      •0•0•0•0•Updated Jan 24, 2022Jan 24, 2022

    • ipalmplotter

      Public
      MATLAB
      •0•0•0•0•Updated Nov 24, 2021Nov 24, 2021

    • MutualInformation

      Public
      MATLAB
      •2•0•0•0•Updated Dec 31, 2020Dec 31, 2020

    • colocalization

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 1, 2020Dec 1, 2020

    • one-offs

      Public
      A collection of one-off scripts (a.k.a our junk drawer)
      Python
      •1•1•0•0•Updated Jul 30, 2020Jul 30, 2020

    • perceptually-uniform-projection

      Public
      Perceptually Uniform Projection (PUP) macro for ImageJ/Fiji
      Other
      •0•0•0•0•Updated Jul 8, 2020Jul 8, 2020

    • 4d-frap-calculator

      Public
      Calculate Fluorescence Recovery After Photobleaching (FRAP) curves using 4d (x,y,z,t) microscope images.
      MATLAB
      •1•0•0•0•Updated Mar 3, 2020Mar 3, 2020

    • RatioImage

      Public
      MATLAB
      •0•0•0•0•Updated May 22, 2019May 22, 2019