Repositories list

• scRNAseq-STomics_PeyersPatches_IleumVsJejunum

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  R

  •1•0•0•0•Updated Sep 12, 2023Sep 12, 2023

• jej_Nuc_BD

  Public
  Trial of BD Rhapsody single nuclei sequencing from porcine jejunum

  Python

  •0•0•0•0•Updated Dec 30, 2022Dec 30, 2022

• mastitis_scRNAseq

  Public
  R

  •1•0•0•0•Updated Dec 28, 2022Dec 28, 2022

• NG10_TIEL_Microbiota

  Public
  Scripts for analysis of T-IELs and microbiota data.

  1•0•0•0•Updated Aug 31, 2022Aug 31, 2022

• scRNAseqEpSI_Pilot

  Public
  Pilot study - single-cell RNA sequencing analysis of epithelial cells from pig small intestinal tract

  R

  •1•0•0•0•Updated Apr 15, 2022Apr 15, 2022

• O157LineageAssignment

  Public
  Python

  •2•0•0•0•Updated Mar 7, 2022Mar 7, 2022

• FS12b

  Public
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  •1•0•0•0•Updated Mar 3, 2022Mar 3, 2022

• scRNAseq_Porcine_Ileum_PBMC

  Public
  HTML

  •2•1•0•0•Updated Mar 2, 2022Mar 2, 2022

• PorcinePBMCs_bulkRNAseq_scRNAseq

  Public
  Scripts used for analysis of bulk RNA-seq, NanoString, and single-cell RNA-seq data from porcine PBMCs in the manuscript "Reference transcriptomes of porcine peripheral immune cells created through bulk and single-cell RNA sequencing" by Herrera-Uribe & Wiarda et al, 2021 (Preprint), available at https://doi.org/10.1101/2021.04.02.438107.

  HTML

  •3•7•0•0•Updated Feb 23, 2022Feb 23, 2022

• gobal_i4512i

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  R

  •0•0•0•0•Updated Oct 14, 2021Oct 14, 2021

• O157_rumen_proteomics_1

  Public
  R

  •0•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• Campy_HGT

  Public
  R

  •1•0•0•0•Updated Jul 14, 2021Jul 14, 2021

• FS19C-commensal-Ecoli

  Public
  HTML

  •1•0•0•0•Updated Jun 10, 2021Jun 10, 2021

• FS9

  Public
  R

  •1•0•0•0•Updated May 29, 2021May 29, 2021

• methods_share

  Public
  0•0•0•0•Updated May 3, 2021May 3, 2021