Repositories list

• mykrobe-data

  Public
  Data for mykrobe command line tool

  MIT License

  •2•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• mykrobe

  Public
  Antibiotic resistance prediction in minutes

  Python

  •

  MIT License

  •28•106•16•2•Updated May 22, 2024May 22, 2024

• mccortex

  Public
  Cortex on steroids: for larger populations with better assembly

  C

  •

  MIT License

  •25•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• mykrobe-atlas-tracking-api

  Public
  Sample tracking service for Mykrobe Atlas project

  Python

  •0•0•0•1•Updated Feb 15, 2023Feb 15, 2023

• mykrobe-atlas-distance-api

  Public
  Python

  •0•0•3•1•Updated Feb 15, 2023Feb 15, 2023

• mykrobe-website

  Public
  JavaScript

  •0•0•0•1•Updated Nov 28, 2022Nov 28, 2022

• mykrobe-lineage-test

  Public
  Test species and lineage calls made by mykrobe

  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 6, 2022Sep 6, 2022

• mykrobe-atlas-k8

  Public
  Shell

  •0•0•0•1•Updated Jan 1, 2022Jan 1, 2022

• atlas_ena_curation

  Public
  Automated pipeline built on top of clockwork and the kmersearch-api for download and processing of tb samples from the ENA

  Python

  •0•0•0•0•Updated Dec 19, 2021Dec 19, 2021

• mykrobe-atlas-kmersearch-api

  Public
  Python

  •0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

• mykrobe-atlas-distance-data

  Public
  Pipelines and scripts for calculating genetic distance between samples

  Python

  •0•1•0•0•Updated Dec 17, 2021Dec 17, 2021

• mykrobe-atlas-analysis-api

  Public
  The analysis API and task manager for Mykrobe atlas

  Python

  •0•0•0•0•Updated Dec 16, 2021Dec 16, 2021

• mykrobe-atlas

  Public
  0•1•0•0•Updated Sep 23, 2021Sep 23, 2021

• mykrobe-atlas-kmersearch-pipeline

  Public
  Nextflow

  •0•0•0•0•Updated Aug 20, 2021Aug 20, 2021

• mykrobe-atlas-api

  Public
  Server API for Atlas

  JavaScript

  •0•1•0•0•Updated Aug 17, 2021Aug 17, 2021

• mykrobe-atlas-kmersearch-api-client

  Public
  REST API client library for accessing Mykrobe Atlas Kmersearch API

  Python

  •0•0•0•0•Updated Jul 9, 2021Jul 9, 2021

• mykrobe-atlas-jsonschema

  Public
  JSON Schemas associated with Mykrobe Atlas

  JavaScript

  •

  MIT License

  •0•1•0•0•Updated Jun 4, 2021Jun 4, 2021

• mykrobe-atlas-data-upload

  Public
  Documentation and scripts for uploading preprocessed analysis data to Kubernetes hosted applications.

  Python

  •0•0•0•0•Updated May 21, 2021May 21, 2021

• mykrobe-atlas-kafka-consumer

  Public
  Java

  •0•0•0•0•Updated Apr 23, 2021Apr 23, 2021

• mykrobe-atlas-tracking-client

  Public
  Python

  •0•0•0•0•Updated Feb 23, 2021Feb 23, 2021

• mykrobe-atlas-background-variants-db

  Public
  A Mongo db which hosts tb background variants to support Mykrobe make probes functionality for Atlas

  Dockerfile

  •0•0•0•0•Updated Feb 10, 2021Feb 10, 2021

• mykrobe-atlas-id-migrator

  Public
  Python

  •0•0•0•0•Updated Nov 20, 2020Nov 20, 2020

• mykrobe-atlas-distance-client

  Public
  REST API client library for accessing Mykrobe Atlas distance API

  Python

  •0•0•0•0•Updated Nov 6, 2020Nov 6, 2020

• mykrobe-atlas-api-k8

  Public
  Shell

  •0•0•0•1•Updated Jun 25, 2020Jun 25, 2020

• mykrobe-atlas-keycloak

  Public
  Keycloak configuration for Atlas

  JavaScript

  •0•0•0•0•Updated Apr 30, 2020Apr 30, 2020

• mykrobe-atlas-pipelines

  Public
  0•0•0•0•Updated Apr 30, 2020Apr 30, 2020

• clockwork

  Public
  CRyPTIC data processing pipelines

  HTML

  •

  MIT License

  •22•1•0•0•Updated Jan 15, 2020Jan 15, 2020

• mykrobe-atlas-insight

  Public
  Insight pipeline for Mykrobe Atlas

  Shell

  •0•0•0•0•Updated Aug 20, 2018Aug 20, 2018