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V05 dev2 #36

Merged
merged 44 commits into from
Oct 28, 2024
Merged

V05 dev2 #36

merged 44 commits into from
Oct 28, 2024

Commits on Jun 7, 2024

  1. Handle 404 for /zarr.json AND /.zattrs

    @will-moore
    will-moore committed Jun 7, 2024
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  2. Load v0.5 schemas from github PR branch

    @will-moore
    will-moore committed Jun 7, 2024
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Commits on Jun 12, 2024

  1. Fix display of Array info for Zarr v3

    @will-moore
    will-moore committed Jun 12, 2024
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  2. Fix display of .zarray .zattrs and zarr.json in UI

    @will-moore
    will-moore committed Jun 12, 2024
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Commits on Jun 13, 2024

  1. Update loading of zarr chunks with zarrita

    @will-moore
    will-moore committed Jun 13, 2024
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Commits on Jun 14, 2024

  1. Handle 0.5-dev version

    @will-moore
    will-moore committed Jun 14, 2024
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  2. Top of 3D cube - align lines with front face

    @will-moore
    will-moore committed Jun 14, 2024
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Commits on Jun 25, 2024

  1. Update to zarrita.js 0.4.0-next.14

    @will-moore
    will-moore committed Jun 25, 2024
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Commits on Jun 28, 2024

  1. Update version check to correspond to fix in schemas PR

    @will-moore
    will-moore committed Jun 28, 2024
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Commits on Jul 3, 2024

  1. Handle v0.5-dev2 data

    @will-moore
    will-moore committed Jul 3, 2024
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Commits on Jul 4, 2024

  1. Load version.schema for v0.5 schemas

    @will-moore
    will-moore committed Jul 4, 2024
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  2. Check dimension_names for all zarr.json

    @will-moore
    will-moore committed Jul 4, 2024
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Commits on Jul 11, 2024

  1. Temporarily hard-code zarr3 for neuroglancer

    @joshmoore
    joshmoore committed Jul 11, 2024
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  2. Fix loading of zarr v3 plates

    @will-moore
    will-moore committed Jul 11, 2024
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Commits on Jul 15, 2024

  1. Temporarily hard-code a zarrita-version of vizarr

    @joshmoore
    joshmoore committed Jul 15, 2024
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Commits on Aug 7, 2024

  1. Revert "Temporarily hard-code a zarrita-version of vizarr" 

    vizarr PR is now merged
This reverts commit 3a1ecfb.
    @will-moore
    will-moore committed Aug 7, 2024
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Commits on Aug 14, 2024

  1. Support display of shards

    @will-moore
    will-moore committed Aug 14, 2024
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Commits on Aug 16, 2024

  1. Handle labels for v0.5 data

    @will-moore
    will-moore committed Aug 16, 2024
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  2. Update zarrita to 0.4.0-next.15

    @will-moore
    will-moore committed Aug 16, 2024
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Commits on Aug 21, 2024

  1. Load and display Ro-create json

    @will-moore
    will-moore committed Aug 21, 2024
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  2. Check Ro-Crate name, description, license

    @will-moore
    will-moore committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. Handle data with no sharding codecs

    @will-moore
    will-moore committed Aug 22, 2024
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  2. Try to parse and lookup Organism and Imaging method from Ro-crate

    @will-moore
    will-moore committed Aug 22, 2024
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  3. Use different warning levels for missing metadata

    @will-moore
    will-moore committed Aug 22, 2024
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Commits on Sep 2, 2024

  1. Improve version checking. Handle missing version 0.4

    @will-moore
    will-moore committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. Fix bioformats2raw page with v0.5 data

    @will-moore
    will-moore committed Sep 3, 2024
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  2. Fix validation of Wells in Plate view

    @will-moore
    will-moore committed Sep 3, 2024
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Commits on Sep 24, 2024

  1. Add ro-crate-metadata support to bioformats2raw component

    @will-moore
    will-moore committed Sep 24, 2024
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Commits on Sep 27, 2024

  1. Load _version schema. Validate using 'attributes' as JSON root

    @will-moore
    will-moore committed Sep 27, 2024
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  2. remove console.trace()

    @will-moore
    will-moore committed Sep 27, 2024
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  3. Only validate jsonData.attributes for v0.5 data

    @will-moore
    will-moore committed Sep 27, 2024
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Commits on Oct 1, 2024

  1. Handle /OME/zarr.json series metadata for bf2raw data

    @will-moore
    will-moore committed Oct 1, 2024
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Commits on Oct 2, 2024

  1. Fix bytesPerPixel for Zarr v3 dtypes

    @will-moore
    will-moore committed Oct 2, 2024
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Commits on Oct 12, 2024

  1. Fix copy-and-paste error in lookupImagingMethod()

    @will-moore
    will-moore committed Oct 12, 2024
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Commits on Oct 14, 2024

  1. Add OME Logo to nav bar

    @will-moore
    will-moore committed Oct 14, 2024
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  2. Use omeLinkBlue for links etc

    @will-moore
    will-moore committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. Backgroud white

    @will-moore
    will-moore committed Oct 15, 2024
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Commits on Oct 17, 2024

  1. Only Open With vizarr for v0.5 data

    @will-moore
    will-moore committed Oct 17, 2024
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  2. Fix RO-Crate capitalisation

    @will-moore
    will-moore committed Oct 17, 2024
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  3. Add links from terms to Ontologies

    @will-moore
    will-moore committed Oct 17, 2024
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Commits on Oct 21, 2024

  1. Show Open-with on bioformats2raw page

    @will-moore
    will-moore committed Oct 21, 2024
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Commits on Oct 22, 2024

  1. Fix Open-with links from bioformats2raw page

    @will-moore
    will-moore committed Oct 22, 2024
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Commits on Oct 25, 2024

  1. Cleanup and use schema from ome branch on NGFF repo

    @will-moore
    will-moore committed Oct 25, 2024
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Commits on Oct 28, 2024

  1. Fix new-line at end of file

    @will-moore
    will-moore committed Oct 28, 2024
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