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Addresses #2785 Automatically pull in HuBMAP 2D images #2805

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@aleixpuigb aleixpuigb commented Nov 26, 2024

Addresses #2785 Automatically pull in HuBMAP 2D images

  • Write Python script to generate a ROBOT template from the output of this query - folding in DOIs.
  • Incorporate template into automatic build
  • Allow for manual addition of comments mapping annotations to cell types where annotation labels are different.

@aleixpuigb aleixpuigb added HuBMAP Needed/useful for HuBMAP tech labels Nov 26, 2024
@aleixpuigb aleixpuigb self-assigned this Nov 26, 2024
@aleixpuigb aleixpuigb linked an issue Nov 26, 2024 that may be closed by this pull request
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@dosumis
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dosumis commented Nov 26, 2024

Looks good. Could also potentially use GRLC.

@aleixpuigb
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Looks good. Could also potentially use GRLC.

This comment comes from my ignorance, but what is the advantage of using GRLC? Thanks!

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dosumis commented Nov 26, 2024

This comment comes from my ignorance, but what is the advantage of using GRLC? Thanks!

GRLC endpoint allows a simple REST API query rather than having the whole SPARQL query in your code. It's just simpler and we rely on them to write the SPARQL

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Automatically pull in HuBMAP 2D images
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