separating_gut_meosthelial_from_gut_lining

[dosumis]

• Mesothelial cells of gut now part of serosa
• tidying up partonomy for intestinal lining
• Fixed brush border on enteroycte

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-21/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-21/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

PP cell of intestine http://purl.obolibrary.org/obo/CL_0002680

Removed

• PP cell of intestine EquivalentTo PP cell and (BFO_0000050 some UBERON_0000160)

Added

• PP cell of intestine EquivalentTo PP cell and (BFO_0000050 some UBERON_0001277)

UBERON_0001206 http://purl.obolibrary.org/obo/UBERON_0001206

Added

• Class: UBERON_0001206

UBERON_0001242 http://purl.obolibrary.org/obo/UBERON_0001242

Removed

• Class: UBERON_0001242

UBERON_0003335 http://purl.obolibrary.org/obo/UBERON_0003335

Added

• Class: UBERON_0003335

UBERON_0012498 http://purl.obolibrary.org/obo/UBERON_0012498

Added

• Class: UBERON_0012498

UBERON_0015716 http://purl.obolibrary.org/obo/UBERON_0015716

Added

• Class: UBERON_0015716

enteroendocrine cell of anorectum http://purl.obolibrary.org/obo/CL_0009063

Added

• enteroendocrine cell of anorectum SubClassOf BFO_0000050 some UBERON_0001278

epithelial cell of anal column http://purl.obolibrary.org/obo/CL_0002634

Removed

• epithelial cell of anal column EquivalentTo epithelial cell and (BFO_0000050 some UBERON_0009882)

Added

• epithelial cell of anal column EquivalentTo intestinal epithelial cell and (BFO_0000050 some UBERON_0009882)

epithelial cell of appendix http://purl.obolibrary.org/obo/CL_1000405

Removed

• epithelial cell of appendix EquivalentTo epithelial cell and (BFO_0000050 some UBERON_0001154)

Added

• epithelial cell of appendix EquivalentTo intestinal epithelial cell and (BFO_0000050 some UBERON_0001154)

intestinal enteroendocrine cell http://purl.obolibrary.org/obo/CL_1001516

Removed

• intestinal enteroendocrine cell EquivalentTo enteroendocrine cell and (BFO_0000050 some UBERON_0001242)

Added

• intestinal enteroendocrine cell EquivalentTo enteroendocrine cell and (BFO_0000050 some UBERON_0001277)

intestinal epithelial cell http://purl.obolibrary.org/obo/CL_0002563

Removed

• intestinal epithelial cell EquivalentTo epithelial cell and (BFO_0000050 some UBERON_0000160)

Added

• intestinal epithelial cell EquivalentTo epithelial cell and (BFO_0000050 some UBERON_0001277)

keratinized epithelial cell of the anal canal http://purl.obolibrary.org/obo/CL_0002637

Removed

• keratinized epithelial cell of the anal canal SubClassOf stratified squamous epithelial cell of anal canal

mesothelial cell of appendix http://purl.obolibrary.org/obo/CL_0009029

Removed

• mesothelial cell of appendix EquivalentTo mesothelial cell and (BFO_0000050 some UBERON_0001154)

• mesothelial cell of appendix SubClassOf epithelial cell of appendix

Added

• mesothelial cell of appendix EquivalentTo mesothelial cell and (BFO_0000050 some UBERON_0012498)

• mesothelial cell of appendix SubClassOf BFO_0000050 some UBERON_0012498

• mesothelial cell of appendix SubClassOf epithelial cell of alimentary canal

mesothelial cell of colon http://purl.obolibrary.org/obo/CL_0009025

Removed

• mesothelial cell of colon EquivalentTo mesothelial cell and (BFO_0000050 some UBERON_0001155)

Added

• mesothelial cell of colon EquivalentTo mesothelial cell and (BFO_0000050 some UBERON_0003335)

• mesothelial cell of colon SubClassOf BFO_0000050 some UBERON_0003335

mesothelial cell of small intestine http://purl.obolibrary.org/obo/CL_0009024

Removed

• mesothelial cell of small intestine EquivalentTo mesothelial cell and (BFO_0000050 some UBERON_0002108)

• mesothelial cell of small intestine SubClassOf epithelial cell of small intestine

Added

• mesothelial cell of small intestine EquivalentTo mesothelial cell and (BFO_0000050 some UBERON_0001206)

• mesothelial cell of small intestine SubClassOf BFO_0000050 some UBERON_0001206

• mesothelial cell of small intestine SubClassOf epithelial cell of alimentary canal

stratified squamous epithelial cell of anal canal http://purl.obolibrary.org/obo/CL_0009066

Removed

• stratified squamous epithelial cell of anal canal EquivalentTo stratified squamous epithelial cell and (BFO_0000050 some UBERON_0000159)

• stratified squamous epithelial cell of anal canal SubClassOf BFO_0000050 some UBERON_0000159

Added

• stratified squamous epithelial cell of anal canal EquivalentTo stratified squamous epithelial cell and (BFO_0000050 some UBERON_0015716)

• stratified squamous epithelial cell of anal canal SubClassOf BFO_0000050 some UBERON_0015716

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

PP cell of intestine http://purl.obolibrary.org/obo/CL_0002680

Removed

• PP cell of intestine EquivalentTo PP cell and (part of some intestine)

Added

• PP cell of intestine EquivalentTo PP cell and (part of some intestinal epithelium)

enterocyte http://purl.obolibrary.org/obo/CL_0000584

Removed

• enterocyte SubClassOf brush border epithelial cell

Added

• enterocyte SubClassOf has part some brush border

enteroendocrine cell of anorectum http://purl.obolibrary.org/obo/CL_0009063

Added

• enteroendocrine cell of anorectum SubClassOf part of some epithelium of large intestine

epithelial cell of anal column http://purl.obolibrary.org/obo/CL_0002634

Removed

• epithelial cell of anal column EquivalentTo epithelial cell and (part of some anal column)

Added

• epithelial cell of anal column EquivalentTo intestinal epithelial cell and (part of some anal column)

epithelial cell of appendix http://purl.obolibrary.org/obo/CL_1000405

Removed

• epithelial cell of appendix EquivalentTo epithelial cell and (part of some vermiform appendix)

Added

• epithelial cell of appendix EquivalentTo intestinal epithelial cell and (part of some vermiform appendix)

glandular cell of the large intestine http://purl.obolibrary.org/obo/CL_0002658

Added

• glandular cell of the large intestine SubClassOf epithelial cell of large intestine

intestinal enteroendocrine cell http://purl.obolibrary.org/obo/CL_1001516

Removed

• intestinal enteroendocrine cell EquivalentTo enteroendocrine cell and (part of some intestinal mucosa)

Added

• intestinal enteroendocrine cell EquivalentTo enteroendocrine cell and (part of some intestinal epithelium)

intestinal epithelial cell http://purl.obolibrary.org/obo/CL_0002563

Removed

• intestinal epithelial cell EquivalentTo epithelial cell and (part of some intestine)

• intestinal epithelial cell SubClassOf part of some intestinal epithelium

Added

• intestinal epithelial cell EquivalentTo epithelial cell and (part of some intestinal epithelium)

mesothelial cell of appendix http://purl.obolibrary.org/obo/CL_0009029

Removed

• mesothelial cell of appendix EquivalentTo mesothelial cell and (part of some vermiform appendix)

Added

• mesothelial cell of appendix EquivalentTo mesothelial cell and (part of some serosa of appendix)

mesothelial cell of colon http://purl.obolibrary.org/obo/CL_0009025

Removed

• mesothelial cell of colon EquivalentTo mesothelial cell and (part of some colon)

Added

• mesothelial cell of colon EquivalentTo mesothelial cell and (part of some serosa of colon)

mesothelial cell of small intestine http://purl.obolibrary.org/obo/CL_0009024

Removed

• mesothelial cell of small intestine EquivalentTo mesothelial cell and (part of some small intestine)

Added

• mesothelial cell of small intestine EquivalentTo mesothelial cell and (part of some serosa of small intestine)

regulation of nitric oxide biosynthetic process http://purl.obolibrary.org/obo/GO_0045428

Added

• Class: regulation of nitric oxide biosynthetic process

stratified squamous epithelial cell of anal canal http://purl.obolibrary.org/obo/CL_0009066

Removed

• stratified squamous epithelial cell of anal canal EquivalentTo stratified squamous epithelial cell and (part of some anal canal)

Added

• stratified squamous epithelial cell of anal canal EquivalentTo stratified squamous epithelial cell and (part of some anal canal epithelium)

[dosumis]

Diffs are a bit odd. Maybe some edits bleeding in from Master?

[dosumis]

Diffs now good.

[Caroline-99]

#gogoeditdiff

[Caroline-99]

#gogoeditdiff