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Addresses #2113 Update MESH Tree Number cross-references #2114

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Aug 22, 2023
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Addresses #2113 Update MESH Tree Number cross-references #2114

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14 changes: 8 additions & 6 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4688,7 +4688,7 @@ SubClassOf(obo:CL_0000131 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000223))

# Class: obo:CL_0000132 (corneal endothelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:A09.371.060.067.31") Annotation(oboInOwl:hasDbXref "PMID:21976958") Annotation(oboInOwl:hasDbXref "PMID:23284695") Annotation(oboInOwl:hasDbXref "PMID:34741068") Annotation(oboInOwl:hasDbXref "PMID:36769303") obo:IAO_0000115 obo:CL_0000132 "An hexagonal, flattened, mitochondria-rich endothelial cell that forms a monolayer on the posterior surface of the cornea (the corneal endothelium). Corneal endothelial cells are derived from the neural crest and are responsible for keeping the cornea transparent by maintaining the tissue in a semi-dry state through the action of their ionic pumps and tight junction barrier.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:21976958") Annotation(oboInOwl:hasDbXref "PMID:23284695") Annotation(oboInOwl:hasDbXref "PMID:34741068") Annotation(oboInOwl:hasDbXref "PMID:36769303") obo:IAO_0000115 obo:CL_0000132 "An hexagonal, flattened, mitochondria-rich endothelial cell that forms a monolayer on the posterior surface of the cornea (the corneal endothelium). Corneal endothelial cells are derived from the neural crest and are responsible for keeping the cornea transparent by maintaining the tissue in a semi-dry state through the action of their ionic pumps and tight junction barrier.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000132 "CALOHA:TS-0172")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000132 "FMA:70614")
AnnotationAssertion(rdfs:label obo:CL_0000132 "corneal endothelial cell")
Expand Down Expand Up @@ -6355,7 +6355,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0000332 "true"^^xsd:boolean)

# Class: obo:CL_0000333 (migratory neural crest cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:A16.254.600") obo:IAO_0000115 obo:CL_0000333 "A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1016/j.stem.2015.02.017") obo:IAO_0000115 obo:CL_0000333 "A cell derived from the specialized ectoderm flanking each side of the embryonic neural plate, which after the closure of the neural tube, forms masses of cells that migrate out from the dorsal aspect of the neural tube to spread throughout the body.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000333 "FMA:86667")
AnnotationAssertion(rdfs:label obo:CL_0000333 "migratory neural crest cell")
SubClassOf(obo:CL_0000333 obo:CL_0000003)
Expand Down Expand Up @@ -8031,7 +8031,7 @@ SubClassOf(obo:CL_0000546 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000896))

# Class: obo:CL_0000547 (proerythroblast)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "MESH:A11.118.290.350.200") Annotation(oboInOwl:hasDbXref "PMID:1638021") obo:IAO_0000115 obo:CL_0000547 "An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") Annotation(oboInOwl:hasDbXref "PMID:1638021") obo:IAO_0000115 obo:CL_0000547 "An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells. This cell is CD71-positive, has both a nucleus and a nucleolus, and lacks hematopoeitic lineage markers.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000547 "FMA:83518")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0721601464") oboInOwl:hasExactSynonym obo:CL_0000547 "rubriblast")
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000547 "pronormoblast")
Expand Down Expand Up @@ -8269,9 +8269,10 @@ SubClassOf(obo:CL_0000567 obo:CL_0000198)

# Class: obo:CL_0000568 (amine precursor uptake and decarboxylation cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") Annotation(oboInOwl:hasDbXref "MESH:A11.070") obo:IAO_0000115 obo:CL_0000568 "A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0721662544") obo:IAO_0000115 obo:CL_0000568 "A cell that originates in the neural crest, that has certain cytochemical and ultrastructural characteristics and is found scattered throughout the body; types include melanocytes, the cells of the chromaffin system, and cells in the hypothalamus, hypophysis, thyroid, parathyroids, lungs, gastrointestinal tract, and pancreas. This cell type concentrates the amino acid precursors of certain amines and decarboxylate them, forming amines that function as regulators and neurotransmitters. This cell type produces substances such as epinephrine, norepinephrine, dopamine, serotonin, enkephalin, somatostatin, neurotensin, and substance P, the actions of which may affect contiguous cells, nearby groups of cells, or distant cells, thus functioning as local or systemic hormones. The name is an acronym for amine precursor uptake and decarboxylation cell.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000568 "BTO:0003866")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000568 "FMA:83114")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000568 "MESH:D001078")
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AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000568 "APUD cell")
AnnotationAssertion(rdfs:label obo:CL_0000568 "amine precursor uptake and decarboxylation cell")
SubClassOf(obo:CL_0000568 obo:CL_0000165)
Expand Down Expand Up @@ -8359,9 +8360,10 @@ SubClassOf(obo:CL_0000576 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000559))

# Class: obo:CL_0000577 (type EC enteroendocrine cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:A03.492.766.440.250") Annotation(oboInOwl:hasDbXref "PMID:9505449") obo:IAO_0000115 obo:CL_0000577 "A subtype of enteroendocrine cells found in the gastrointestinal mucosa, particularly in the glands of pyloric antrum; duodenum; and ileum. These cell type secretes serotonin and some neurotransmitters including enkephalins and substance P. Their secretory granules stain readily with silver (argentaffin stain).")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9505449") obo:IAO_0000115 obo:CL_0000577 "A subtype of enteroendocrine cells found in the gastrointestinal mucosa, particularly in the glands of pyloric antrum; duodenum; and ileum. These cell type secretes serotonin and some neurotransmitters including enkephalins and substance P. Their secretory granules stain readily with silver (argentaffin stain).")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000577 "FMA:62934")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000577 "FMA:83132")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000577 "MESH:D004759")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000577 "Kulchitsky cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000577 "argentaffin cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000577 "enterochromaffin cell")
Expand Down Expand Up @@ -8472,7 +8474,7 @@ SubClassOf(obo:CL_0000587 obo:CL_0000205)

# Class: obo:CL_0000588 (odontoclast)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "MESH:A11.329.679") obo:IAO_0000115 obo:CL_0000588 "A specialized osteoclast associated with the absorption and removal of cementum.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") obo:IAO_0000115 obo:CL_0000588 "A specialized osteoclast associated with the absorption and removal of cementum.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000588 "BTO:0002516")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000588 "FMA:83027")
AnnotationAssertion(rdfs:label obo:CL_0000588 "odontoclast")
Expand Down