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Move terms under [peripheral nervous system neuron] (#2665)
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* Move terms under [peripheral nervous system neuron]

Fixes #2656

* Move terms under [peripheral nervous system neuron]

Fixes #2656

* Update cl-edit.owl

* Update cl-edit.owl

* Update cl-edit.owl

* Update cl-edit.owl

* Update cl-edit.owl

---------

Co-authored-by: CEastwood <[email protected]>
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@AvolaAmg @Caroline-99
AvolaAmg and Caroline-99 authored Oct 28, 2024
1 parent eff64f8 commit da02263
Showing 1 changed file with 14 additions and 14 deletions.
28 changes: 14 additions & 14 deletions src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3181,6 +3181,7 @@ Declaration(Class(obo:PR_000014419))
Declaration(Class(obo:PR_000014898))
Declaration(Class(obo:PR_000015325))
Declaration(Class(obo:PR_000015665))
Declaration(Class(obo:PR_000016626))
Declaration(Class(obo:PR_000017299))
Declaration(Class(obo:PR_000032148))
Declaration(Class(obo:PR_000032533))
Expand Down Expand Up @@ -3342,7 +3343,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")

AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")

# Annotation Property: obo:IAO_0000700 (preferred_root)
# Annotation Property: obo:IAO_0000700 (has ontology root term)

AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")

Expand Down Expand Up @@ -3436,11 +3437,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)
# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")

# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)
# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

Expand Down Expand Up @@ -4556,7 +4557,7 @@ SubClassOf(obo:CL_0000101 obo:CL_0000526)
# Class: obo:CL_0000102 (polymodal neuron)

AnnotationAssertion(rdfs:label obo:CL_0000102 "polymodal neuron")
SubClassOf(obo:CL_0000102 obo:CL_0000540)
SubClassOf(obo:CL_0000102 obo:CL_2000032)

# Class: obo:CL_0000103 (bipolar neuron)

Expand All @@ -4579,15 +4580,15 @@ EquivalentClasses(obo:CL_0000104 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeV
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67305") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000105 "Neuron with two neurites that are fused grossly when they protrude from the soma and bifurcate a short distance from the soma.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000105 "FMA:67305")
AnnotationAssertion(rdfs:label obo:CL_0000105 "pseudounipolar neuron")
SubClassOf(obo:CL_0000105 obo:CL_0000540)
SubClassOf(obo:CL_0000105 obo:CL_2000032)

# Class: obo:CL_0000106 (unipolar neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:67278") Annotation(oboInOwl:hasDbXref "GOC:nv") obo:IAO_0000115 obo:CL_0000106 "Neuron with one neurite that extends from the cell body.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000106 "FMA:67278")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0000106 cl:BDS_subset)
AnnotationAssertion(rdfs:label obo:CL_0000106 "unipolar neuron")
SubClassOf(obo:CL_0000106 obo:CL_0000540)
SubClassOf(obo:CL_0000106 obo:CL_2000032)

# Class: obo:CL_0000107 (autonomic neuron)

Expand Down Expand Up @@ -5118,8 +5119,8 @@ AnnotationAssertion(owl:deprecated obo:CL_0000161 "true"^^xsd:boolean)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:31613538") Annotation(oboInOwl:hasDbXref "PMID:31670611") obo:IAO_0000115 obo:CL_0000162 "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by its pyramidal shape, abundant mitochondria, and a complex network of secretory canaliculi lined with microvilli. It secretes hydrochloric acid into the stomach lumen and produces intrinsic factor, essential for vitamin B12 absorption.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "BTO:0001780")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "FMA:62901")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") oboInOwl:hasExactSynonym obo:CL_0000162 "gastric parietal cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") Annotation(oboInOwl:hasDbXref "PMID:31613538") rdfs:comment obo:CL_0000162 "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function.")
AnnotationAssertion(rdfs:label obo:CL_0000162 "parietal cell")
SubClassOf(obo:CL_0000162 obo:CL_0000151)
Expand Down Expand Up @@ -5892,7 +5893,6 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000247 "Rohon-Beard cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "VHOG:0001484") oboInOwl:hasRelatedSynonym obo:CL_0000247 "RB neuron")
AnnotationAssertion(rdfs:label obo:CL_0000247 "Rohon-Beard neuron")
SubClassOf(obo:CL_0000247 obo:CL_0000531)
SubClassOf(obo:CL_0000247 obo:CL_4023168)

# Class: obo:CL_0000248 (obsolete microsporocyte)

Expand Down Expand Up @@ -6834,7 +6834,7 @@ SubClassOf(obo:CL_0000378 obo:CL_0000630)
# Class: obo:CL_0000379 (sensory processing neuron)

AnnotationAssertion(rdfs:label obo:CL_0000379 "sensory processing neuron")
SubClassOf(obo:CL_0000379 obo:CL_0000540)
SubClassOf(obo:CL_0000379 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000010)))

# Class: obo:CL_0000380 (thecogen cell)

Expand Down Expand Up @@ -9958,7 +9958,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BCs")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) Annotation(oboInOwl:hasSynonymType obo:OMO_0003004) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BPs")
AnnotationAssertion(rdfs:label obo:CL_0000748 "retinal bipolar neuron")
EquivalentClasses(obo:CL_0000748 ObjectIntersectionOf(obo:CL_0000103 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001791)))
EquivalentClasses(obo:CL_0000748 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001791)))
SubClassOf(obo:CL_0000748 obo:CL_0009004)
SubClassOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002215 ObjectIntersectionOf(obo:GO_0061535 ObjectSomeValuesFrom(obo:BFO_0000050 obo:GO_0098976))))
SubClassOf(obo:CL_0000748 ObjectSomeValuesFrom(obo:RO_0002216 obo:GO_0007601))
Expand Down Expand Up @@ -24121,7 +24121,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12486170") Annotation(ob
AnnotationAssertion(rdfs:comment obo:CL_0010022 "This term is used in 3 GO terms that were created as part of the heart development focus project.")
AnnotationAssertion(rdfs:label obo:CL_0010022 "cardiac neuron")
AnnotationAssertion(rdfs:seeAlso obo:CL_0010022 "https://github.com/obophenotype/cell-ontology/pull/1488")
EquivalentClasses(obo:CL_0010022 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000948)))
EquivalentClasses(obo:CL_0010022 ObjectIntersectionOf(obo:CL_2000032 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000948)))

# Class: obo:CL_0011000 (dorsal horn interneuron)

Expand Down Expand Up @@ -24501,7 +24501,7 @@ AnnotationAssertion(owl:deprecated obo:CL_0011112 "true"^^xsd:boolean)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") obo:IAO_0000115 obo:CL_0011113 "Neuron found in the spiral ganglion.")
AnnotationAssertion(rdfs:label obo:CL_0011113 "spiral ganglion neuron")
EquivalentClasses(obo:CL_0011113 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000395)))
EquivalentClasses(obo:CL_0011113 ObjectIntersectionOf(obo:CL_2000032 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000395)))
SubClassOf(obo:CL_0011113 obo:CL_0000540)

# Class: obo:CL_0011114 (segmented neutrophil of bone marrow)
Expand Down Expand Up @@ -28013,8 +28013,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "HPA:HPA") Annotation(oboInOwl
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001591 "CALOHA:TS-1277")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "fallopian tube glandular cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "fallopian tube glandular cells")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "uterine tube glandular cell")
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_1001591 "oviduct glandular cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "CALOHA:TS-1277") oboInOwl:hasRelatedSynonym obo:CL_1001591 "uterine tube glandular cell")
AnnotationAssertion(rdfs:label obo:CL_1001591 "oviduct secretory cell")
EquivalentClasses(obo:CL_1001591 ObjectIntersectionOf(obo:CL_1100001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000993)))
SubClassOf(obo:CL_1001591 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004804))
Expand Down Expand Up @@ -30543,7 +30543,7 @@ SubClassOf(obo:CL_4023164 obo:CL_4023162)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22865660") obo:IAO_0000115 obo:CL_4023168 "A neuron that is part of the somatic sensory system. Somatosensory neurons innervate the skin or integument to detect different types of thermal, chemical, and mechanical touch stimuli.")
AnnotationAssertion(terms:contributor obo:CL_4023168 <http://orcid.org/0000-0001-7258-9596>)
AnnotationAssertion(rdfs:label obo:CL_4023168 "somatosensory neuron")
EquivalentClasses(obo:CL_4023168 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003942)))
EquivalentClasses(obo:CL_4023168 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003942) ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000010)))

# Class: obo:CL_4023169 (trigeminal neuron)

Expand Down

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