Merge branch 'master' into adjust-the-hierarchy-CNS-nematoda-and-CNS-…

…vertebrata
obophenotype · Nov 8, 2024 · b306863 · b306863
2 parents c108586 + 2d3f273
commit b306863
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diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -3139,6 +3139,7 @@ Declaration(Class(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33))
 Declaration(Class(obo:GO_0001552))
 Declaration(Class(obo:GO_0005903))
 Declaration(Class(obo:GO_0005927))
+Declaration(Class(obo:GO_0019626))
 Declaration(Class(obo:GO_0031045))
 Declaration(Class(obo:GO_0036053))
 Declaration(Class(obo:GO_0036376))
@@ -25654,13 +25655,14 @@ SubClassOf(obo:CL_1000346 obo:CL_0002071)
 
 # Class: obo:CL_1000347 (colonocyte)
 
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_1000347 "A columnar cell of the colon that is part of the colonic epithelium.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:16870803") Annotation(oboInOwl:hasDbXref "PMID:23821742") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_1000347 "An enterocyte (absorptive epithelial cell) of the colonic epithelium, characterized by a columnar shape. This cell is responsible for the absorption, transport, and metabolization of short-chain fatty acids (SCFAs) produced by gut bacteria, as well as the transport and absorption of water and electrolytes.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000347 "FMA:263114")
 AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000347 "enterocyte of colon")
 AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_1000347 "vacuolar absorptive cell of epithelium of colon")
 AnnotationAssertion(rdfs:label obo:CL_1000347 "colonocyte")
 EquivalentClasses(obo:CL_1000347 ObjectIntersectionOf(obo:CL_0002071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000397)))
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000347 obo:CL_0002071)
+SubClassOf(obo:CL_1000347 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019626))
+SubClassOf(obo:CL_1000347 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035377))
 
 # Class: obo:CL_1000348 (basal cell of epithelium of trachea)
 
@@ -27042,12 +27044,10 @@ SubClassOf(obo:CL_1000703 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000478
 
 # Class: obo:CL_1000706 (ureter urothelial cell)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36180582") obo:IAO_0000115 obo:CL_1000706 "A urothelial cell that is part of the urothelium of ureter.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000706 "KUPO:0001117")
 AnnotationAssertion(rdfs:label obo:CL_1000706 "ureter urothelial cell")
 EquivalentClasses(obo:CL_1000706 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001254)))
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000706 obo:CL_0000731)
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000706 obo:CL_1000601)
-SubClassOf(obo:CL_1000706 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001254))
 
 # Class: obo:CL_1000708 (ureter adventitial cell)
 
@@ -27676,12 +27676,10 @@ EquivalentClasses(obo:CL_1001428 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeV
 
 # Class: obo:CL_1001430 (urethra urothelial cell)
 
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23589830") Annotation(oboInOwl:hasDbXref "PMID:36180582") obo:IAO_0000115 obo:CL_1001430 "A urothelial cell that is part of the urethra urothelium. This cell plays a crucial role in maintaining the urethral barrier function, protecting against toxic substances in urine, sensing environmental changes, and defending against pathogen entry.")
 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001430 "KUPO:0001124")
 AnnotationAssertion(rdfs:label obo:CL_1001430 "urethra urothelial cell")
 EquivalentClasses(obo:CL_1001430 ObjectIntersectionOf(obo:CL_0000731 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004787)))
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001430 obo:CL_0000731)
-SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1001430 obo:CL_1001320)
-SubClassOf(obo:CL_1001430 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004787))
 
 # Class: obo:CL_1001431 (kidney collecting duct principal cell)
 

diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt
@@ -16,3 +16,4 @@ GO:0045428
 GO:0005927
 GO:0050893
 GO:0001552
+GO:0019626