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Fixes #2728 NTR atretic follicular cell of ovary (#2730)
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* Fixes #2728 NTR atretic follicular cell of ovary

Fixes #2728 NTR atretic follicular cell of ovary

* Add PR term
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@aleixpuigb
aleixpuigb authored Nov 5, 2024
1 parent 75d9619 commit 578f930
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24 changes: 12 additions & 12 deletions src/mappings/fbbt.sssom.tsv
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@@ -1,17 +1,17 @@
#curie_map:
# CL: "http://purl.obolibrary.org/obo/CL_"
# FBbt: "http://purl.obolibrary.org/obo/FBbt_"
# ORCID: "https://orcid.org/"
# obo: "http://purl.obolibrary.org/obo/"
#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv"
#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies."
# CL: http://purl.obolibrary.org/obo/CL_
# FBbt: http://purl.obolibrary.org/obo/FBbt_
# ORCID: https://orcid.org/
# obo: http://purl.obolibrary.org/obo/
#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv
#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies.
#creator_id:
# - "ORCID:0000-0002-1373-1705"
# - "ORCID:0000-0002-6095-8718"
#license: "https://creativecommons.org/licenses/by/4.0/"
#subject_source: "obo:fbbt.owl"
#object_source: "obo:cl.owl"
#mapping_date: "2024-07-12"
# - ORCID:0000-0002-1373-1705
# - ORCID:0000-0002-6095-8718
#license: https://creativecommons.org/licenses/by/4.0/
#subject_source: obo:fbbt.owl
#object_source: obo:cl.owl
#mapping_date: 2024-07-12
subject_id subject_label predicate_id object_id mapping_justification
FBbt:00000092 primordial germ cell semapv:crossSpeciesExactMatch CL:0000301 semapv:ManualMappingCuration
FBbt:00000124 epithelial cell semapv:crossSpeciesExactMatch CL:0000066 semapv:ManualMappingCuration
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28 changes: 24 additions & 4 deletions src/ontology/cl-edit.owl
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Expand Up @@ -3042,6 +3042,8 @@ Declaration(Class(obo:CL_4033085))
Declaration(Class(obo:CL_4033086))
Declaration(Class(obo:CL_4033087))
Declaration(Class(obo:CL_4033088))
Declaration(Class(obo:CL_4033089))
Declaration(Class(obo:CL_4033090))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
Expand Down Expand Up @@ -3356,7 +3358,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")

AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")

# Annotation Property: obo:IAO_0000700 (has ontology root term)
# Annotation Property: obo:IAO_0000700 (preferred_root)

AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")

Expand Down Expand Up @@ -3450,11 +3452,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)
# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")

# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)
# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

Expand Down Expand Up @@ -9420,7 +9422,7 @@ SubClassOf(obo:CL_0000677 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000127

# Class: obo:CL_0000678 (commissural neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31693445") Annotation(oboInOwl:hasDbXref "PMID:17560562") obo:IAO_0000115 obo:CL_0000678 "A neuron with soma location in the central nervous system that project its axon to the contralateral side of a central nervous system. This neuron can have its soma in the spinal cord, in the hemisphere of the brain, in the retina or in the ventral nerve cord of invertebrates.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17560562") Annotation(oboInOwl:hasDbXref "PMID:31693445") obo:IAO_0000115 obo:CL_0000678 "A neuron with soma location in the central nervous system that project its axon to the contralateral side of a central nervous system. This neuron can have its soma in the spinal cord, in the hemisphere of the brain, in the retina or in the ventral nerve cord of invertebrates.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25960414") Annotation(oboInOwl:hasDbXref "PMID:27532244") Annotation(oboInOwl:hasDbXref "PMID:31514748") Annotation(oboInOwl:hasDbXref "PMID:33438755") rdfs:comment obo:CL_0000678 "Historically, commissural neurons, particularly in the spinal cord, have been used as a model to understand axon guidance during development.")
AnnotationAssertion(rdfs:label obo:CL_0000678 "commissural neuron")
SubClassOf(obo:CL_0000678 obo:CL_0000540)
Expand Down Expand Up @@ -32221,6 +32223,24 @@ AnnotationAssertion(rdfs:label obo:CL_4033088 "decidual resident macrophage")
SubClassOf(obo:CL_4033088 obo:CL_4033087)
SubClassOf(obo:CL_4033088 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002450))

# Class: obo:CL_4033089 (atretic follicular cell of ovary)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:38069168") obo:IAO_0000115 obo:CL_4033089 "A follicular cell of ovary that has begun to degenerate and undergo atresia, a specialized apoptosis. This cell is found in an atretic follicle, which is an ovarian follicle that started to mature but failed to reach full development and instead regresses.")
AnnotationAssertion(terms:contributor obo:CL_4033089 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:date obo:CL_4033089 "2024-11-05T11:23:25Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4033089 "atretic follicular cell of ovary")
EquivalentClasses(obo:CL_4033089 ObjectIntersectionOf(obo:CL_0002174 ObjectSomeValuesFrom(obo:RO_0000056 obo:GO_0001552)))

# Class: obo:CL_4033090 (atretic granulosa cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15353131") Annotation(oboInOwl:hasDbXref "PMID:38069168") obo:IAO_0000115 obo:CL_4033090 "A granulosa cell that is undergoing atresia. This cell type displays distinct morphological alterations compared with a healthy granulosa cell, including pyknosis (nuclear condensation) and cellular shrinkage.")
AnnotationAssertion(terms:contributor obo:CL_4033090 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:date obo:CL_4033090 "2024-11-05T11:25:28Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15353131") oboInOwl:hasRelatedSynonym obo:CL_4033090 "apoptotic granulosa cell")
AnnotationAssertion(rdfs:label obo:CL_4033090 "atretic granulosa cell")
SubClassOf(obo:CL_4033090 obo:CL_4033089)
SubClassOf(obo:CL_4033090 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000501))

# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
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2 changes: 1 addition & 1 deletion src/ontology/imports/go_terms.txt
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Expand Up @@ -15,4 +15,4 @@ GO:1990573
GO:0045428
GO:0005927
GO:0050893

GO:0001552
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