more clean up

nmfs-opensci · Apr 26, 2024 · 34de05d · 34de05d
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diff --git a/content/SDM_Part1_Final.pdf b/content/SDM_Part1_Final.pdf
diff --git a/content/XX-further-resources.md b/content/XX-further-resources.md
diff --git a/content/XX-r-and-python-resources.md b/content/XX-r-and-python-resources.md
diff --git a/docs/Python-notebooks/00_NASA_Earthdata_Authentication.html b/docs/Python-notebooks/00_NASA_Earthdata_Authentication.html
@@ -7,7 +7,7 @@
 <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
 
 
-<title>2024 NOAA HackDays - Authentication for NASA Earthdata</title>
+<title>2024 EDMW Workshop 3B - Authentication for NASA Earthdata</title>
 <style>
 code{white-space: pre-wrap;}
 span.smallcaps{font-variant: small-caps;}
@@ -64,7 +64,7 @@
 <script src="../site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="../">
 <link href="../python-notebooks/01_earthaccess_Downloader.html" rel="next">
-<link href="../projects/hackathon-projects.html" rel="prev">
+<link href="../r-tutorials/05-r-geospatial.html" rel="prev">
 <link href="../images/favicon-16x16.png" rel="icon" type="image/png">
 <script src="../site_libs/quarto-html/quarto.js"></script>
 <script src="../site_libs/quarto-html/popper.min.js"></script>
@@ -116,7 +116,7 @@
       <div class="navbar-container container-fluid">
       <div class="navbar-brand-container mx-auto">
     <a class="navbar-brand" href="../index.html">
-    <span class="navbar-title">2024 NOAA HackDays</span>
+    <span class="navbar-title">2024 EDMW Workshop 3B</span>
     </a>
   </div>
             <div id="quarto-search" class="" title="Search"></div>
@@ -131,9 +131,14 @@
 <span class="menu-text">JupyterHub</span></a>
   </li>  
   <li class="nav-item">
-    <a class="nav-link" href="https://github.com/nmfs-opensci/NOAAHackDays-2024/discussions"> <i class="bi bi-wechat" role="img">
+    <a class="nav-link" href="https://github.com/nmfs-opensci/EDMW-EarthData-Workshop-2024/discussions"> <i class="bi bi-wechat" role="img">
 </i> 
 <span class="menu-text">Discussions</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="https://github.com/nmfs-opensci/EDMW-EarthData-Workshop-2024"> <i class="bi bi-github" role="img">
+</i> 
+<span class="menu-text">Repo</span></a>
   </li>  
   <li class="nav-item">
     <a class="nav-link" href="https://github.com/nmfs-opensci"> <i class="bi bi-globe" role="img">
@@ -314,24 +319,12 @@
   <a href="../content/02-quarto.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Quarto</span></a>
   </div>
-</li>
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../content/03-ai.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Programming with AI</span></a>
-  </div>
 </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../r-tutorials/03-r-read-in-data.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">Loading data in R</span></a>
   </div>
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-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../r-tutorials/04-r-ggplot2.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Plotting with ggplot2</span></a>
-  </div>
 </li>
           <li class="sidebar-item">
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@@ -344,87 +337,46 @@
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
             <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" aria-expanded="false">
- <span class="menu-text">Marine SDMs</span></a>
+ <span class="menu-text">Earth Data in R</span></a>
           <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-7" aria-expanded="false" aria-label="Toggle section">
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       <ul id="quarto-sidebar-section-7" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../r-tutorials/Lab-setup.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Lab Setup</span></a>
-  </div>
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-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../r-tutorials/SDM-lab1.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">SDM 1</span></a>
-  </div>
-</li>
+ <span class="menu-text">Searching &amp; subsetting</span>
+  </li>
           <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../r-tutorials/SDM-lab-robis.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">robis</span></a>
-  </div>
-</li>
+ <span class="menu-text">Getting the data</span>
+  </li>
           <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../r-tutorials/SDM-lab-spocc.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">spocc</span></a>
-  </div>
-</li>
+ <span class="menu-text">Extract in a boundary</span>
+  </li>
           <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../r-tutorials/Turtle_maxnet.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">MaxEnt SDM</span></a>
-  </div>
-</li>
-      </ul>
+ <span class="menu-text">Extract on a transect</span>
   </li>
       </ul>
   </li>
-        <li class="sidebar-item sidebar-item-section">
-      <div class="sidebar-item-container"> 
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-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../projects/index.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Projects Overview</span></a>
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-  <div class="sidebar-item-container"> 
-  <a href="../projects/hackathon-projects.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Hackathon Projects</span></a>
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         <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-9" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-8" aria-expanded="true">
  <span class="menu-text">Python Tutorials</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-9" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-8" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-9" class="collapse list-unstyled sidebar-section depth1 show">  
+      <ul id="quarto-sidebar-section-8" class="collapse list-unstyled sidebar-section depth1 show">  
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-10" aria-expanded="true">
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-9" aria-expanded="true">
  <span class="menu-text">Data Access</span></a>
-          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-10" aria-expanded="true" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-9" aria-expanded="true" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-10" class="collapse list-unstyled sidebar-section depth2 show">  
+      <ul id="quarto-sidebar-section-9" class="collapse list-unstyled sidebar-section depth2 show">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../python-notebooks/00_NASA_Earthdata_Authentication.html" class="sidebar-item-text sidebar-link active">
@@ -459,13 +411,13 @@
   </li>
           <li class="sidebar-item sidebar-item-section">
       <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-11" aria-expanded="false">
+            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-10" aria-expanded="false">
  <span class="menu-text">Using Data</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-11" aria-expanded="false" aria-label="Toggle section">
+          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-10" aria-expanded="false" aria-label="Toggle section">
             <i class="bi bi-chevron-right ms-2"></i>
           </a> 
       </div>
-      <ul id="quarto-sidebar-section-11" class="collapse list-unstyled sidebar-section depth2 ">  
+      <ul id="quarto-sidebar-section-10" class="collapse list-unstyled sidebar-section depth2 ">  
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
   <a href="../python-notebooks/02_Using_Data.html" class="sidebar-item-text sidebar-link">
@@ -477,52 +429,9 @@
   </li>
           <li class="sidebar-item">
   <div class="sidebar-item-container"> 
-  <a href="../python-notebooks/02_Zarr_Access_netCDF.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Zarr Access for NetCDF4 files</span></a>
-  </div>
-</li>
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../python-notebooks/02_Xarray_hvplot.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">03. Introduction to <code>xarray</code></span></a>
-  </div>
-</li>
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
   <a href="../python-notebooks/02_Xarray_hvplot.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text">03. Introduction to <code>xarray</code></span></a>
   </div>
-</li>
-      </ul>
-  </li>
-          <li class="sidebar-item sidebar-item-section">
-      <span class="sidebar-item-text sidebar-link text-start">
- <span class="menu-text">Machine Learning</span></span>
-  </li>
-          <li class="sidebar-item sidebar-item-section">
-      <span class="sidebar-item-text sidebar-link text-start">
- <span class="menu-text">Applications</span></span>
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-          <li class="sidebar-item sidebar-item-section">
-      <div class="sidebar-item-container"> 
-            <a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-14" aria-expanded="false">
- <span class="menu-text">IO Zarr Database</span></a>
-          <a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-14" aria-expanded="false" aria-label="Toggle section">
-            <i class="bi bi-chevron-right ms-2"></i>
-          </a> 
-      </div>
-      <ul id="quarto-sidebar-section-14" class="collapse list-unstyled sidebar-section depth2 ">  
-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../python-notebooks/04_Combining_Data.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Combine, clean, and export the data</span></a>
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-          <li class="sidebar-item">
-  <div class="sidebar-item-container"> 
-  <a href="../python-notebooks/04_Appending_Data.html" class="sidebar-item-text sidebar-link">
- <span class="menu-text">Adding new data</span></a>
-  </div>
 </li>
       </ul>
   </li>
@@ -550,7 +459,7 @@ <h2 id="toc-title">On this page</h2>
   <li><a href="#summary" id="toc-summary" class="nav-link active" data-scroll-target="#summary">Summary</a></li>
   <li><a href="#import-required-packages" id="toc-import-required-packages" class="nav-link" data-scroll-target="#import-required-packages">Import Required Packages</a></li>
   </ul>
-<div class="toc-actions"><ul class="collapse"><li><a href="https://github.dev/nmfs-opensci/NOAAHackDays-2024/blob/main/python-notebooks/00_NASA_Earthdata_Authentication.ipynb" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/nmfs-opensci/NOAAHackDays-2024/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li><li><a href="https://github.com/nmfs-opensci/NOAAHackDays-2024/blob/main/python-notebooks/00_NASA_Earthdata_Authentication.ipynb" class="toc-action"><i class="bi empty"></i>View source</a></li></ul></div></nav>
+<div class="toc-actions"><ul class="collapse"><li><a href="https://github.dev/nmfs-opensci/EDMW-EarthData-Workshop-2024/blob/main/python-notebooks/00_NASA_Earthdata_Authentication.ipynb" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/nmfs-opensci/EDMW-EarthData-Workshop-2024/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li><li><a href="https://github.com/nmfs-opensci/EDMW-EarthData-Workshop-2024/blob/main/python-notebooks/00_NASA_Earthdata_Authentication.ipynb" class="toc-action"><i class="bi empty"></i>View source</a></li></ul></div></nav>
     </div>
 <!-- main -->
 <main class="content" id="quarto-document-content">
@@ -1197,8 +1106,8 @@ <h4 class="anchored" data-anchor-id="see-if-the-file-was-created">See if the fil
 </script>
 <nav class="page-navigation">
   <div class="nav-page nav-page-previous">
-      <a href="../projects/hackathon-projects.html" class="pagination-link  aria-label=" hackathon="" projects"="">
-        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Hackathon Projects</span>
+      <a href="../r-tutorials/05-r-geospatial.html" class="pagination-link  aria-label=" maps!"="">
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Maps!</span>
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