GitHub - nifets/TorusEvol: This is a Bayesian model for sequence and structure alignment of multiple proteins in a star phylogeny. The structural divergence across time is modelled by letting the dihedral angles of the backbones evolve according to a diffusion over the flat square torus.

(WIP) Sequence and structure evolution model for proteins

Name		Name	Last commit message	Last commit date
Latest commit History 91 Commits
.VSCodeCounter/2023-04-28_12-00-52		.VSCodeCounter/2023-04-28_12-00-52
.ipynb_checkpoints		.ipynb_checkpoints
.vscode		.vscode
archive		archive
data		data
images		images
listings		listings
src		src
test		test
.gitattributes		.gitattributes
.gitignore		.gitignore
Ancestor Reconstruction.ipynb		Ancestor Reconstruction.ipynb
Bisection.ipynb		Bisection.ipynb
Globins Experiment.ipynb		Globins Experiment.ipynb
Manifest.toml		Manifest.toml
Pair Parameter Inference.ipynb		Pair Parameter Inference.ipynb
Project.toml		Project.toml
ProteinViewer.ipynb		ProteinViewer.ipynb
README.md		README.md
Simulated Data Experiments.ipynb		Simulated Data Experiments.ipynb
Simulated Experiment.ipynb		Simulated Experiment.ipynb
Triple Parameter Inference.ipynb		Triple Parameter Inference.ipynb
Untitled.ipynb		Untitled.ipynb
chain-file.jls		chain-file.jls
evol_traj_globins.png		evol_traj_globins.png
jumpingdiff.png		jumpingdiff.png
persistence.png		persistence.png
simulated data.png		simulated data.png
test.ipynb		test.ipynb

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