aws_runner #19
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| name: aws_runner | |
| on: workflow_dispatch | |
| jobs: | |
| start-runner: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| label: ${{ steps.start-ec2-runner.outputs.label }} | |
| ec2-instance-id: ${{ steps.start-ec2-runner.outputs.ec2-instance-id }} | |
| steps: | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_KEY_SECRET }} | |
| aws-region: ${{ vars.AWS_REGION }} | |
| - name: Start EC2 runner | |
| id: start-ec2-runner | |
| uses: machulav/ec2-github-runner@v2 | |
| with: | |
| mode: start | |
| github-token: ${{ secrets.GH_TOKEN }} | |
| ec2-image-id: ${{ vars.AWS_IMAGE_ID }} | |
| ec2-instance-type: ${{ vars.AWS_INSTANCE_TYPE }} | |
| subnet-id: ${{ vars.AWS_SUBNET }} | |
| security-group-id: ${{ vars.AWS_SECURITY_GROUP }} | |
| test-model: | |
| name: Do the job on the runner | |
| needs: [start-runner] # push-model, build, build-docker, push-weights, start-runner] # required to start the main job when the runner is ready | |
| runs-on: ${{ needs.start-runner.outputs.label }} # run the job on the newly created runner | |
| steps: | |
| - run: export HOME=/home/ubuntu | |
| - name: do it | |
| run: echo $HOME | |
| # Setups singularity to the job to make it accessible to other steps | |
| # Cleanup steps to free up disk space | |
| - name: Cleanup disk space for large docker images | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf /opt/hostedtoolcache | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: Free Disk Space (Ubuntu) | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| # this might remove tools that are actually needed, | |
| # if set to "true" but frees about 6 GB | |
| tool-cache: false | |
| # all of these default to true, but feel free to set to | |
| # "false" if necessary for your workflow | |
| android: true | |
| dotnet: true | |
| haskell: true | |
| large-packages: true | |
| docker-images: false | |
| # Datalad get the sample dataset | |
| - name: Get sample dataset | |
| run: | | |
| apt install unzip datalad python3-pip tree -y | |
| python3 -m pip install datalad-installer datalad-osf | |
| datalad-installer --sudo ok git-annex -m datalad/git-annex:release | |
| sudo git config --global filter.annex.process "git-annex filter-process" | |
| # - name: configure git credentials | |
| # run: | | |
| # git config --system user.name "test_aws" | |
| # git config --system user.email "test_aws" | |
| - name: Set up Git | |
| run: | | |
| export HOME=/home/ubuntu | |
| echo $HOME | |
| git config --global user.email "test_aws" | |
| git config --global user.name "test_aws" | |
| git config --global credential.helper cache | |
| git config --global credential.https://github.com.username "${{ secrets.GITHUB_USERNAME }}" | |
| git config --global credential.https://github.com.password "${{ secrets.GITHUB_TOKEN }}" | |
| env: | |
| GITHUB_USERNAME: ${{ secrets.GH_USERNAME }} | |
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | |
| # If branchName is empty use issue number, else, use the branchName 🟢 | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: datalad get | |
| run: | | |
| datalad siblings | |
| datalad siblings | |
| cd PialNN/pialnn/1.0.0/data | |
| datalad get . | |
| find . -name "*.zip" -exec unzip {} \; | |
| mv example example_aws4 | |
| - run: | | |
| git config user.name | |
| git config user.email | |
| datalad-push: | |
| name: running datalad push as a separate job | |
| needs: [start-runner, test-model] | |
| runs-on: ${{ needs.start-runner.outputs.label }} | |
| steps: | |
| - run: | | |
| git config user.name | |
| git config user.email | |
| - run: tree | |
| - name: datalad push | |
| run: | | |
| datalad save -m "pushing new unzipped folder" PialNN/pialnn/1.0.0/data/example_aws4 | |
| tree | |
| datalad push -f all --to test-aws-storage | |
| datalad push --to origin | |
| env: | |
| OSF_TOKEN: ${{ secrets.OSF_TOKEN }} | |
| stop-runner: | |
| name: Stop self-hosted EC2 runner | |
| needs: [start-runner, test-model, datalad-push] # required to wait when the main job is done | |
| runs-on: ubuntu-latest | |
| if: ${{ always() }} | |
| # required to stop the runner even if the error happened in the previous jobs | |
| steps: | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v1 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_KEY_SECRET }} | |
| aws-region: ${{ vars.AWS_REGION }} | |
| - name: Stop EC2 runner | |
| uses: machulav/ec2-github-runner@v2 | |
| with: | |
| mode: stop | |
| github-token: ${{ secrets.GH_TOKEN }} | |
| label: ${{ needs.start-runner.outputs.label }} | |
| ec2-instance-id: ${{ needs.start-runner.outputs.ec2-instance-id }} |