Pull request #664: Added a menu "Style > Clashed Residues > Hide" to …

…hide clashed residues. Merge in STRUC/icn3d from release3370 to master * commit '861823b8571fc1355264afbdb64ef0f1825a992d': Added a menu "Style > Clashed Residues > Hide" to hide clashed residues.
ncbi · Oct 16, 2024 · 7344305 · 7344305
2 parents 072246f + 861823b
commit 7344305
Show file tree

Hide file tree

Showing 32 changed files with 2,694 additions and 1,712 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,4 +1,6 @@
 ## Change Log
+[icn3d-3.37.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.37.0.zip) was release on October 16, 2024. Added a menu "View > Clashed Residues > Hide" to hide clashed residues.
+
 [icn3d-3.36.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.36.1.zip) was release on October 7, 2024. Fixed an issue related to previous chain IDs such as "A_1" (changed to "A1") in previous sharable links.
 
 [icn3d-3.36.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.36.0.zip) was release on October 3, 2024. Allowed to load multiple iCn3D PNG images.

diff --git a/build/icn3d.js b/build/icn3d.js
diff --git a/build/icn3d.min.js b/build/icn3d.min.js
diff --git a/build/icn3d.module.js b/build/icn3d.module.js
diff --git a/dist/CHANGELOG.md b/dist/CHANGELOG.md
@@ -1,4 +1,6 @@
 ## Change Log
+[icn3d-3.37.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.37.0.zip) was release on October 16, 2024. Added a menu "View > Clashed Residues > Hide" to hide clashed residues.
+
 [icn3d-3.36.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.36.1.zip) was release on October 7, 2024. Fixed an issue related to previous chain IDs such as "A_1" (changed to "A1") in previous sharable links.
 
 [icn3d-3.36.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.36.0.zip) was release on October 3, 2024. Allowed to load multiple iCn3D PNG images.

diff --git a/dist/full.html b/dist/full.html
@@ -19,11 +19,11 @@
   <div id="div0"></div>
 
   <link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
-  <link rel="stylesheet" href="icn3d_3.36.1.css">
+  <link rel="stylesheet" href="icn3d_3.37.0.css">
   <script src="lib/jquery-3.5.0.min.js"></script>
   <script src="lib/jquery-ui-1.13.2.min.js"></script>
   <script src="lib/three_0.151.0.min.js"></script>
-  <script src="icn3d_3.36.1.min.js"></script>
+  <script src="icn3d_3.37.0.min.js"></script>
 
   <script type="text/javascript">
 
@@ -41,7 +41,7 @@
           alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
       }
       else {
-          //$.getScript('icn3d_3.36.1.min.js', function() {
+          //$.getScript('icn3d_3.37.0.min.js', function() {
             var version = 3;
             await launchIcn3d(version); //await 
           //});

diff --git a/dist/full2.html b/dist/full2.html
@@ -20,11 +20,11 @@
   <div id="div1" style="float:left;"></div>
 
   <link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
-  <link rel="stylesheet" href="icn3d_3.36.1.css">
+  <link rel="stylesheet" href="icn3d_3.37.0.css">
   <script src="lib/jquery-3.5.0.min.js"></script>
   <script src="lib/jquery-ui-1.13.2.min.js"></script>
   <script src="lib/three_0.151.0.min.js"></script>
-  <script src="icn3d_3.36.1.min.js"></script>
+  <script src="icn3d_3.37.0.min.js"></script>
 
   <script type="text/javascript">
     $( document ).ready(async function() {
@@ -41,7 +41,7 @@
           alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
       }
       else {
-          //$.getScript('icn3d_3.36.1.min.js', function() {
+          //$.getScript('icn3d_3.37.0.min.js', function() {
             var version = 3;
             await launchIcn3d(version);
           //});

diff --git a/dist/full2_3.36.1.html → dist/full2_3.37.0.html b/dist/full2_3.36.1.html → dist/full2_3.37.0.html
@@ -20,11 +20,11 @@
   <div id="div1" style="float:left;"></div>
 
   <link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
-  <link rel="stylesheet" href="icn3d_3.36.1.css">
+  <link rel="stylesheet" href="icn3d_3.37.0.css">
   <script src="lib/jquery-3.5.0.min.js"></script>
   <script src="lib/jquery-ui-1.13.2.min.js"></script>
   <script src="lib/three_0.151.0.min.js"></script>
-  <script src="icn3d_3.36.1.min.js"></script>
+  <script src="icn3d_3.37.0.min.js"></script>
 
   <script type="text/javascript">
     $( document ).ready(async function() {
@@ -41,7 +41,7 @@
           alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
       }
       else {
-          //$.getScript('icn3d_3.36.1.min.js', function() {
+          //$.getScript('icn3d_3.37.0.min.js', function() {
             var version = 3;
             await launchIcn3d(version);
           //});

diff --git a/dist/full_3.36.1.html → dist/full_3.37.0.html b/dist/full_3.36.1.html → dist/full_3.37.0.html
@@ -19,11 +19,11 @@
   <div id="div0"></div>
 
   <link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
-  <link rel="stylesheet" href="icn3d_3.36.1.css">
+  <link rel="stylesheet" href="icn3d_3.37.0.css">
   <script src="lib/jquery-3.5.0.min.js"></script>
   <script src="lib/jquery-ui-1.13.2.min.js"></script>
   <script src="lib/three_0.151.0.min.js"></script>
-  <script src="icn3d_3.36.1.min.js"></script>
+  <script src="icn3d_3.37.0.min.js"></script>
 
   <script type="text/javascript">
 
@@ -41,7 +41,7 @@
           alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
       }
       else {
-          //$.getScript('icn3d_3.36.1.min.js', function() {
+          //$.getScript('icn3d_3.37.0.min.js', function() {
             var version = 3;
             await launchIcn3d(version); //await 
           //});

diff --git a/dist/icn3d-3.36.1.zip → dist/icn3d-3.37.0.zip b/dist/icn3d-3.36.1.zip → dist/icn3d-3.37.0.zip
diff --git a/dist/icn3d.html b/dist/icn3d.html
@@ -494,7 +494,7 @@ <h3>iCn3D gallery with live examples<span style="font-size:0.7em"> ("iCn3D PNG I
 
 <div class="gallery">
     <a href="https://structure.ncbi.nlm.nih.gov/icn3d/share.html?sVtm2898Ev8j5T9J7" target="_blank">
-    <img style="height:300px" src ="https://www.ncbi.nlm.nih.gov/Structure/icn3d/gallery/lig-protein.png"><br>ligand-protein interaction<br>(PDB 3GVU)
+    <img style="height:300px" src ="https://www.ncbi.nlm.nih.gov/Structure/icn3d/gallery/lig-protein.png"><br>ligand-protein interaction (PDB 3GVU)
     </a>
 </div>
 
@@ -728,7 +728,6 @@ <h3>Videos & Tutorials<img src="https://www.ncbi.nlm.nih.gov/Structure/IMG/space
 <li><a href="https://youtu.be/XvjiK5bOtd0">Virtual Reality (VR) views in iCn3D (2023)</a></li><br>
 
 <li><a href="https://www.youtube.com/watch?v=LTq5hYKv7uk&list=PL7dF9e2qSW0Yqd3ZvvjLha5p1C_f7mnq6&index=24">NCBI Protein and Structure Part 6 of 8: Viewing a Structure with iCn3D</a></li><br>
-<li><a href="https://bio.libretexts.org/Bookshelves/Biochemistry/Fundamentals_of_Biochemistry_(Jakubowski_and_Flatt)/Fundamentals_of_Biochemistry_Vol._V_-_Problems/iCn3D_Molecular_Modeling_Tutorials">iCn3D Tutorials by Henry Jakubowski</a></li><br>
 
 
 <!--
@@ -746,6 +745,11 @@ <h3>Videos & Tutorials<img src="https://www.ncbi.nlm.nih.gov/Structure/IMG/space
 <li><a href="https://www.youtube.com/watch?v=Mj77EFgAAQM&list=PLSAXB_etwzD824Q8TMqWPHOUv5z8gIcs5&index=8">iCn3D Tutorials by Digital World Biology (2021-)</a></li><br>
 <li><a href="https://www.youtube.com/watch?v=7GGw4S9tE9E">iCn3D Tutorial by BioMolViz Group (2021)</a></li>
 -->
+
+<li style="font-size:1.5em"><a href="https://bio.libretexts.org/Bookshelves/Biochemistry/Fundamentals_of_Biochemistry_(Jakubowski_and_Flatt)/Fundamentals_of_Biochemistry_Vol._V_-_Problems/iCn3D_Molecular_Modeling_Tutorials">iCn3D Tutorials at bio.libretexts.org by Henry Jakubowski: </a> <button onclick="document.getElementById('henry_tutorial').src = document.getElementById('henry_tutorial').src">Refresh Tutorial</button><br><br>
+<iframe id='henry_tutorial' allowFullScreen='true' src='https://bio.libretexts.org/Bookshelves/Biochemistry/Fundamentals_of_Biochemistry_(Jakubowski_and_Flatt)/Fundamentals_of_Biochemistry_Vol._V_-_Problems/iCn3D_Molecular_Modeling_Tutorials' width='100%' height='100%' style='min-height: 1000px' style='border:none'></iframe>
+</li><br>
+
 </ul>
 
 <span class="anchor" id="faq"></span>