Pull request #540: Enabled users to add custom reference residue numb…

…er with the menu "Analysis > Ref. Number", add (transparent) spheres or cubes for any sets with the menu "Style > Cartoon for a Set", add a line between two sets with the menu "Style > Line btw. Two Sets".

Merge in STRUC/icn3d from release3190 to master

* commit '7a95485f498dc60dcd8662c70960053c9df04650':
  Enabled users to add custom reference residue number with the menu "Analysis > Ref. Number", add (transparent) spheres or cubes for any sets with the menu "Style > Cartoon for a Set", add a line between two sets with the menu "Style > Line btw. Two Sets". Also improved the color legends.

CHANGELOG.md

@@ -1,4 +1,6 @@
 ## Change Log
+[icn3d-3.19.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.19.0.zip) was release on November 16, 2022. Enabled users to add custom reference residue number with the menu "Analysis > Ref. Number", add (transparent) spheres or cubes for any sets with the menu "Style > Cartoon for a Set", add a line between two sets with the menu "Style > Line btw. Two Sets". Also improved the color legends.
+
 [icn3d-3.18.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.18.1.zip) was release on November 8, 2022. Added the annotation "Transmembrane" for PDB or AlphaFold structures based on data from OPM, Membranome, and UniProt; enabled to load a PAE file from a URL in the same domain.
 
 [icn3d-3.18.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.18.0.zip) was release on November 3, 2022. Merged Jack Lin's branch with the following new features: show some basic color legends when coloring a structure; add local Smith-Waterman alignment when aligning two sequences; add a preference in the menu "Style > Prefereces" to enlarge the command window.

dist/CHANGELOG.md

@@ -1,4 +1,6 @@
 ## Change Log
+[icn3d-3.19.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.19.0.zip) was release on November 16, 2022. Enabled users to add custom reference residue number with the menu "Analysis > Ref. Number", add (transparent) spheres or cubes for any sets with the menu "Style > Cartoon for a Set", add a line between two sets with the menu "Style > Line btw. Two Sets". Also improved the color legends.
+
 [icn3d-3.18.1](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.18.1.zip) was release on November 8, 2022. Added the annotation "Transmembrane" for PDB or AlphaFold structures based on data from OPM, Membranome, and UniProt; enabled to load a PAE file from a URL in the same domain.
 
 [icn3d-3.18.0](https://www.ncbi.nlm.nih.gov/Structure/icn3d/icn3d-3.18.0.zip) was release on November 3, 2022. Merged Jack Lin's branch with the following new features: show some basic color legends when coloring a structure; add local Smith-Waterman alignment when aligning two sequences; add a preference in the menu "Style > Prefereces" to enlarge the command window.

dist/full.html

@@ -18,11 +18,11 @@
   <div id="div0"></div>
 
   <link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
-  <link rel="stylesheet" href="icn3d_3.18.1.css">
+  <link rel="stylesheet" href="icn3d_3.19.0.css">
   <script src="lib/jquery-3.5.0.min.js"></script>
   <script src="lib/jquery-ui-1.13.2.min.js"></script>
   <script src="lib/three_0.137.0.min.js"></script>
-  <script src="icn3d_3.18.1.min.js"></script>
+  <script src="icn3d_3.19.0.min.js"></script>
 
   <script type="text/javascript">
 
@@ -40,7 +40,7 @@
           alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
       }
       else {
-          //$.getScript('icn3d_3.18.1.min.js', function() {
+          //$.getScript('icn3d_3.19.0.min.js', function() {
             var version = 3;
             launchIcn3d(version);
           //});

dist/full2.html

@@ -19,11 +19,11 @@
   <div id="div1" style="float:left;"></div>
 
   <link rel="stylesheet" href="lib/jquery-ui-1.13.2.min.css">
-  <link rel="stylesheet" href="icn3d_3.18.1.css">
+  <link rel="stylesheet" href="icn3d_3.19.0.css">
   <script src="lib/jquery-3.5.0.min.js"></script>
   <script src="lib/jquery-ui-1.13.2.min.js"></script>
   <script src="lib/three_0.137.0.min.js"></script>
-  <script src="icn3d_3.18.1.min.js"></script>
+  <script src="icn3d_3.19.0.min.js"></script>
 
   <script type="text/javascript">
     $( document ).ready(function() {
@@ -40,7 +40,7 @@
           alert("IE does NOT work with the current iCn3D version 3. The old iCn3D version 2 is used instead.");
       }
       else {
-          //$.getScript('icn3d_3.18.1.min.js', function() {
+          //$.getScript('icn3d_3.19.0.min.js', function() {
             var version = 3;
             launchIcn3d(version);
           //});