Update expected test output for v3.6.4

ncbi · Jan 7, 2020 · 4b0d673 · 4b0d673
1 parent 1972ba3
commit 4b0d673
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/test_both.expected b/test_both.expected
@@ -10,7 +10,7 @@ NA	contig10	486	1307	+	blaOXA	class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BE
 blaTEM-internal_stop	contig11	113	547	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	144	286	50.35	97.22	144	WP_000027057.1	class A broad-spectrum beta-lactamase TEM-1	NF000531.2	TEM family class A beta-lactamase
 qacR-curated_blast	contig12	71	637	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
 emrD3-suppressed-in-vibrio	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTP	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA
-NA	contig14	1	1089	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	pmrB	NA	NA
-pmrB_C84R	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTP	363	363	100.00	99.72	363	WP_001300761.1	pmrB	NA	NA
-NA	contig15	1	2905	+	23S_A2058T	Escherichia azithromycin/erythromycin/telithromycin resistant 23S	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	5810	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S	NA	NA
+NA	contig14	1	1089	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
+pmrB_C84R	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTP	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
+NA	contig15	1	2905	+	23S_A2058T	Escherichia azithromycin/erythromycin/telithromycin resistant 23S	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	5810	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
 nimIJ_hmm	contigX	1	501	+	nimIJ	NimIJ family nitroimidazole resistance protein	core	AMR	AMR	NITROIMIDAZOLE	NITROIMIDAZOLE	HMM	166	NA	NA	NA	NA	NA	NA	NF000262.1	NimIJ family nitroimidazole resistance protein
diff --git a/test_dna.expected b/test_dna.expected
@@ -10,6 +10,6 @@ NA	contig10	486	1307	+	blaOXA	class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	BE
 NA	contig11	101	958	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	INTERNAL_STOP	286	286	100.00	93.01	286	WP_061158039.1	class A beta-lactamase TEM-156	NF000531.2	TEM family class A beta-lactamase
 NA	contig12	71	634	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTX	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
 NA	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTX	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA
-NA	contig14	1	1089	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	pmrB	NA	NA
-NA	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	pmrB	NA	NA
-NA	contig15	1	2905	+	23S_A2058T	Escherichia azithromycin/erythromycin/telithromycin resistant 23S	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	5810	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S	NA	NA
+NA	contig14	1	1089	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
+NA	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTX	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
+NA	contig15	1	2905	+	23S_A2058T	Escherichia azithromycin/erythromycin/telithromycin resistant 23S	core	AMR	POINT	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN	POINTN	5810	2905	100.00	99.97	2905	NC_004431.1:237160-240064	23S ribosomal RNA	NA	NA
diff --git a/test_prot.expected b/test_prot.expected
@@ -8,5 +8,5 @@ sul2_partial_3p_neg	contig09	715	1377	-	sul2	sulfonamide-resistant dihydropteroa
 blaTEM-internal_stop	contig11	113	547	+	blaTEM	TEM family class A beta-lactamase	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	PARTIALP	144	286	50.35	97.22	144	WP_000027057.1	class A broad-spectrum beta-lactamase TEM-1	NF000531.2	TEM family class A beta-lactamase
 qacR-curated_blast	contig12	71	637	+	qacR	multidrug-binding transcriptional regulator QacR	plus	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	BLASTP	188	188	100.00	99.47	188	ADK23698.1	multidrug-binding transcriptional regulator QacR	NA	NA
 emrD3-suppressed-in-vibrio	contig13	1	1137	+	emrD3	multidrug efflux MFS transporter EmrD-3	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTP	379	379	100.00	100.00	379	ABQ18953.1	multidrug efflux MFS transporter EmrD-3	NA	NA
-pmrB_C84R	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTP	363	363	100.00	99.72	363	WP_001300761.1	pmrB	NA	NA
+pmrB_C84R	contig14	1093	2181	+	pmrB_C84R	Escherichia colistin resistant PmrB	core	AMR	POINT	COLISTIN	COLISTIN	POINTP	363	363	100.00	99.72	363	WP_001300761.1	two-component system sensor histidine kinase PmrB	NA	NA
 nimIJ_hmm	contigX	1	501	+	nimIJ	NimIJ family nitroimidazole resistance protein	core	AMR	AMR	NITROIMIDAZOLE	NITROIMIDAZOLE	HMM	166	NA	NA	NA	NA	NA	NA	NF000262.1	NimIJ family nitroimidazole resistance protein