GitHub - mtbiegler/CFS414_scRNAseq: RStudio Notebook file for object, figure and table generation from scRNAseq data of passage 24 and passage 50 CFS414 cells

mtbiegler / CFS414_scRNAseq Public

Notifications You must be signed in to change notification settings
Fork 1
Star 1

RStudio Notebook file for object, figure and table generation from scRNAseq data of passage 24 and passage 50 CFS414 cells

1 star 1 fork Branches Tags Activity

Star

Notifications

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
CFS414_scRNAseq_Notebook.Rmd		CFS414_scRNAseq_Notebook.Rmd
Reference_files.zip		Reference_files.zip
readme.rtf		readme.rtf

Repository files navigation

This repository contains an RStudio markdown file with the code used to process 10x single-cell RNA 
sequencing data generated from the CFS414 zebra finch cell line at passage 24 and passage 50. There 
is an additional .zip file containing .csv files used in this markdown file.

The scRNAseq files will are listed under accession number GSE195934 available on GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE195934 

Additional files are available upon request to mbiegler (at) gmail (dot) com