Including SD score for pqtl analysis #11
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whimsial
reviewed
Jun 27, 2023
qtl.metadata.R
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| @@ -108,7 +108,7 @@ if (analysis == "eQTL") { | |||
| scores.sd <- data.table(matrix.colname=names(scores.sd), sdscore=as.numeric(scores.sd)) | |||
| setkey(scores.sd, matrix.colname) | |||
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@anwagbata, I think lines with setkey are no longer needed. Can you remove them here and also for 'pQTL' and see if everything runs correctly?
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Yeah, running them without on seems to work fine today, so I have left the setkey.
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Included code for obtaining the standard deviation score for pQTL analysis