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mashu/README.md

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Hello there!

I am a Bioinformatician at Karolinska Institutet, Stockholm, Sweden. Currently developing deep learning models in Flux/Julia for antibody sequence classification from next-generation sequencing data and germline inference. Passionate about leveraging AI to advance our understanding of adaptive immunity.

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  1. NaNTracker.jl NaNTracker.jl Public

    Simple NaNTracker to test backward pass in Flux models.

    Julia

  2. SequenceTokenizers.jl SequenceTokenizers.jl Public

    Character level tokenizers for sequence data

    Julia 1

  3. IgBLAST.jl IgBLAST.jl Public

    A Julia package for running IgBLAST analyses on immunoglobulin (Ig) and T cell receptor (TCR) sequences.

    Julia 3

  4. LineageCollapse.jl LineageCollapse.jl Public

    High-performance Julia package for performing lineage collapsing on immune repertoire sequencing data.

    Julia 3

  5. MultiresNet.jl MultiresNet.jl Public

    Julia implementation of "Sequence Modeling with Multiresolution Convolutional Memory" by Jiaxin Shi et al. (2023)

    Julia

  6. PositionalEmbeddings.jl PositionalEmbeddings.jl Public

    Positional embeddings for enriching sequence data with positional information

    Julia 3