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update readme
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Max Schubach committed Nov 13, 2024
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Expand Up @@ -130,6 +130,20 @@ You can test whether your CADD is set up properly by comparing to the example fi

### Update

### Version 1.6.1

Just a CADD-Script version update for snakemake 8 compatibility and containerization. CADD scores are the same as with CADD-script v1.6 (CADD scores v1.6). Detailed changes:

- only snakemake >= 8.25.2 supported
- using only conda-forge and bioconda channels (no default anymore)
- conda container docker://visze/cadd-scripts-v1_6:0.1.0
- only conda >24.7.1 is allowed (no mamba support anymore)
- VCF2vepVCF.py script fix to extend header. Otherwise regseq will fail using the vcf library
- readme update


### Version 1.6

Version 1.6 includes some changes in comparison to v1.5. Next to the obvious switch of the pipeline into a Snakemake workflow which became necessary due to the ongoin issues with `conda activate`, the new models for v1.6 are extended by more specialized annotations for splicing variants, as well as a few minor changes in some other annotations (most prominent: fixed gerp for GRCh38) and changes in consequence categories which make this scripts incompatible with CADD v1.4 and v1.5. If you are still using those version, please use [version 1.5 of this repository](https://github.com/kircherlab/CADD-scripts/archive/CADD1.5.zip).

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