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General IR reductions/NEWFIRM package
iraf-community/iraf-nfextern
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INSTALLATION (Mar08) nfextern INSTALLATION (Mar08) NFEXTERN: NEWFIRM/IR REDUCTION PACKAGE Release Notes and Installation Instructions SUMMARY The NFEXTERN external package is a container package for tools useful for basic instrumental calibration of NEWFIRM IR data and for image segmentation and catalog. The packages in the container are NEWFIRM, MSCTOOLS, and ACE. The NEWFIRM package has basic tools for NEWFIRM reductions. The MSCTOOLS has general tools for handling MEF format data such as NEWFIRM, and the ACE package provides tools for segmenting images and making source catalogs. RELEASE INFORMATION The following summary only highlights the major changes. There will also be minor changes and bug fixes. The version of a distribution may be found with cl> =nfextern.version 20080320 Version: V2.44: 20140623 Added a workaround for DS9 in msczero to eliminate the coordinate not in an image error. DS9 returns a WCS of [1-9]00 instead of [1-9][0-9][1-9],[1-9][[1-9][0-9]. In particular, for frame 1 it returns 100 instead of 101 or higher. To quickly fix this we check for a 00 and increment it by 1. Version:20111204 64-bit bug fixes for nfproc and ace. A logical bug fixed in nfwcs Version:20111121 A few bug fixes to the ace package Version:20110811 The file nfdat_ctio/nflincoeffs.fits was incorrect Some minor bug fixes Version: 20110524 Rename nfdat to nfdat_kpno Added nfdat_ctio for CTIO data The default definition for nfdat$ is nfdat_ctio A few minor bug fixes Version: 20090126 Added nfdat$bpm. New task nfgroup. New NEWFIRM package help pages. Version: 20090115 Bug fix in the boundary setting of object masks in ace. Version: 20090109 Internal version for SDM NEWFIRM Project testing. Version: 20080320 Initial release of the NEWFIRM, MSCTOOLS, and ACE packages. This version should be considered BETA level. Documentation is only partially complete. INSTALLATION INSTRUCTIONS Installation of this external package consists of obtaining the files, creating a directory containing the package, compiling the executables or installing precompiled executables, and defining the environment to load and run the package. The package may be installed for a site or as a personal installation. If you need help with these installation instructions contact Frank Valdes ([email protected]). [arch] In the following steps you will need to know the IRAF architecture identifier for your IRAF installation. This identifier is similar to the host operating system type. The identifiers are things like "ssun" for Solaris, "linux" or "redhat" for most Linux systems, and "macosx" or "macintel" for Mac systems. The IRAF architecture identifier is defined when you run IRAF. Start the CL and then type cl> show arch .redhat The value you need to know is without the leading '.'; i.e. the IRAF architecture is "redhat" in the above example. [1-site] If you are installing the package for site use login as IRAF and edit the IRAF file defining the packages. % cd $hlib Define the environment variable nfextern to be the pathnames to the nfextern package root directory. Pathnames must be terminated with a '/'. Edit extern.pkg to include the following. reset nfextern = /local/nfextern/ task nfextern.pkg = nfextern$nfextern.cl Near the end of the hlib$extern.pkg file, update the definition of helpdb so it includes the nfextern help database, copying the syntax already used in the string. Add this line before the line containing a closing quote: ,nfextern$lib/helpdb.mip\ [1-personal] If you are installing the package for personal use define a host environment variable with the pathname of the directory where the package will be located (needed in order to build the package from the source code). Note that pathnames must end with '/'. For example: % export nfextern=/local/nfextern/ In your login.cl or loginuser.cl file make the following definitions somewhere before the "keep" statement. reset nfextern = /local/nfextern/ task nfextern.pkg = nfextern$nfextern.cl printf ("reset helpdb=%s,nfextern$lib/helpdb.mip\nkeep\n", envget("helpdb")) | cl flpr If you will be compiling the package, as opposed to installing a binary distribution, then you need to define various environment variables. The following is for Unix/csh which is the main supported environment. # Example % export iraf=/iraf/iraf/ # Path to IRAF root (example) % source $iraf/unix/hlib/irafuser.sh # Define rest of environment % export IRAFARCH=linux # IRAF architecture where you need to supply the appropriate path to the IRAF installation root in the first step and the IRAF architecture identifier for your machine in the last step. [2] Login into IRAF. Create a directory to contain the package files. This directory should be outside the standard IRAF directory tree. cl> mkdir nfextern$ cl> cd nfextern [3] The package is distributed as tar archives for the sources and, as an optional convenience, a tar archive of the executables for select host computers. The tar file(s) are most commonly obtained via anonymous ftp. Below is an example. cl> ftp iraf.noao.edu (140.252.1.1) login: anonymous password: [your email address] ftp> cd iraf/extern ftp> get nfextern.readme ftp> binary ftp> get nfextern-src.tgz ftp> get nfextern-bin.<arch>.tgz (optional) ftp> quit cl> !uncompress nfextern-src cl> !uncompress nfextern-bin.<arch> (optional) The readme file contains these instructions. The <arch> in the optional executable distribution is replaced by the IRAF architecture identification for your computer. [4] Extract the source files from the tar archive using the standard "tar" utility (or possibly "rtar" which is distributed with IRAF). % tar -xvf nfextern-src On some systems, an error message will appear ("Copy 'bin.generic' to './bin fails") which can be ignored. Sites should leave the symbolic link 'bin' in the package root directory pointing to 'bin.generic' but can delete any of the bin.<arch> directories that won't be used. If there is no binary directory for the system you are installing it will be created when the package is compiled later or when the binaries are installed. If the binary executables have been obtained these are now extracted into the appropriate bin.<arch> directory. # Example of redhat installation. % cd nfextern % tar -xvf nfextern-bin.sparc # Creates bin.sparc directory The various tar files can be deleted once they have been successfully installed. [5] For a source installation you now have to build the package executable(s). First go to the package root directory with cl> cd nfextern If you are updating to a newer version and you earlier built the libraries and executables it is necessary to delete these. Otherwise, depending on the dates of files in the new version and the locally built libraries, it may cause the new version to be ignored. To do this the package is configured "generic" which puts all the binary files in one binary directory, the files are deleted and then you continue in the same way as a completely new installation. % mkpkg generic % delete bin.<arch>/* # Substitute redhat, macox, ssun, etc. Configure the package for the particular architecture to be built. % mkpkg <arch> # Substitute sparc, ssun, alpha, etc. This will change the bin link from bin.generic to bin.<arch>. The binary directory will be created if not present. If an error occurs in setting the architecture then you may need to add an entry to the file "mkpkg". Just follow the examples in the file. To create the executables and move them to the binary directory % mkpkg -p nfextern # build executables % mkpkg generic # optionally restore generic setting Check for errors. If the executables are not moved to the binary directory then step [1] to define the path for the package was not done correctly. The last step restores the package to a generic configuration. This is not necessary if you will only have one architecture for the package. This should complete the installation. You can now load the package and begin testing and use.
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