pacman-pipeline-training

This repository contains the materials for the PacMAN bioinformatics pipeline training on 18 November.

Time	Topic
9:00 - 10:30	Bioinformatics pipeline
11:00 - 12:00	Bioinformatics pipeline (continued)
12:00 - 13:00	R crash course
14:00 - 15:00	Bioinformatics pipeline results Data analysis

• Data management slides
• Bioinformatics pipeline tutorial
• R crash course
• Metabarcoding data analysis tutorial

Example datasets

• Rey et al. 2020. Considerations for metabarcoding-based port biological baseline surveys aimed at marine nonindigenous species monitoring and risk assessments

Trainer resources

• Setting up a shared server for training

Other resources

• Data Wrangling and Processing for Genomics
• DADA2 tutorial