This repository is a WIP

• Goal: a python package where sequence goes in --> embeddings come out
• Goal #2: provide as many models as possible
• Goal #3 include feature predictors

Progress

Embedders:

• SeqVec v1
• SeqVec v2
• TransformerXL
• Fastext
• Glove
• Word2Vec

Feature extractors

• SeqVec v1
  • DSSP8
  • DSSP3
  • Disorder
  • Subcell loc
  • Membrane boundness
• SeqVec v2
• TransformerXL
• Fastext
• Glove
• Word2Vec

Todo

• Decouple embedders from feature extractors
• Add more embedders

Wanna use it now?

Use the notebooks folder, that will always include the latest version of the src. Note: although this is in alpha, we will try to keep the API consistent.