Synching up branches #1021
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* Bump spec_tests/hed-examples from `8824691` to `7117cf9` Bumps [spec_tests/hed-examples](https://github.com/hed-standard/hed-examples) from `8824691` to `7117cf9`. - [Release notes](https://github.com/hed-standard/hed-examples/releases) - [Commits](hed-standard/hed-examples@8824691...7117cf9) --- updated-dependencies: - dependency-name: spec_tests/hed-examples dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump spec_tests/hed-specification from `5465995` to `5bc506c` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `5465995` to `5bc506c`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@5465995...5bc506c) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Improve .tsv loading to support children referenced before parent * fix typo * Fix for unknown library hedIDs, minor updates to CI workflows(run on 3.11) * Pass a tuple in word cloud, not np array * Bump spec_tests/hed-examples from `7117cf9` to `bce0c7a` Bumps [spec_tests/hed-examples](https://github.com/hed-standard/hed-examples) from `7117cf9` to `bce0c7a`. - [Release notes](https://github.com/hed-standard/hed-examples/releases) - [Commits](hed-standard/hed-examples@7117cf9...bce0c7a) --- updated-dependencies: - dependency-name: spec_tests/hed-examples dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Cache and retrieve library_data.json from hed-schemas * Add a new add_hed_ids script. Minor documentation corrections * Bump spec_tests/hed-specification from `5bc506c` to `07812cd` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `5bc506c` to `07812cd`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@5bc506c...07812cd) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump spec_tests/hed-specification from `07812cd` to `7cf62e5` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `07812cd` to `7cf62e5`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@07812cd...7cf62e5) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Add hedId value checking to schema validation Fix version attribute for merged schemas Remove cache hit from scripts(I think it's not required, but we'll see...) rename tag_util -> util in the normal validator * Don't escape double quotes in .tsv schemas Slightly improve importing of load_dataframes/save_dataframes by adding to init * Fix crash in unmerged schema validation. Always cache with_standard schemas, even if merged * Fix create_ontology using the wrong tag range for libraries * Bump spec_tests/hed-specification from `7cf62e5` to `19b29fe` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `7cf62e5` to `19b29fe`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@7cf62e5...19b29fe) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Fix it so it caches the local hed files when asking for all versions * More fixes for local schema caching/testing * Add optional flag to validate_schemas script to validate all 3 types always * Have the validator script save schemas merged, not unmerged, to prevent an issue where it was saved with a with_standard schema that has since changed * Bump spec_tests/hed-examples from `bce0c7a` to `6e265bf` Bumps [spec_tests/hed-examples](https://github.com/hed-standard/hed-examples) from `bce0c7a` to `6e265bf`. - [Release notes](https://github.com/hed-standard/hed-examples/releases) - [Commits](hed-standard/hed-examples@bce0c7a...6e265bf) --- updated-dependencies: - dependency-name: spec_tests/hed-examples dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Always save schemas with newlines, never CLRF * Update hed id verification to allow removal of tags without hedIDs * Add annotationExternal to omn generation Change how schemas are sorted(so library nodes always go to the top) Move a bunch of ontology_util to df_util * Bump spec_tests/hed-examples from `6e265bf` to `ba86a84` Bumps [spec_tests/hed-examples](https://github.com/hed-standard/hed-examples) from `6e265bf` to `ba86a84`. - [Release notes](https://github.com/hed-standard/hed-examples/releases) - [Commits](hed-standard/hed-examples@6e265bf...ba86a84) --- updated-dependencies: - dependency-name: spec_tests/hed-examples dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump paambaati/codeclimate-action from 8.0.0 to 9.0.0 Bumps [paambaati/codeclimate-action](https://github.com/paambaati/codeclimate-action) from 8.0.0 to 9.0.0. - [Release notes](https://github.com/paambaati/codeclimate-action/releases) - [Changelog](https://github.com/paambaati/codeclimate-action/blob/main/CHANGELOG.md) - [Commits](paambaati/codeclimate-action@v8.0.0...v9.0.0) --- updated-dependencies: - dependency-name: paambaati/codeclimate-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> * Updated the spec_test with additional tests * Bump spec_tests/hed-specification from `19b29fe` to `bae5675` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `19b29fe` to `bae5675`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@19b29fe...bae5675) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump spec_tests/hed-specification from `bae5675` to `d3bac05` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `bae5675` to `d3bac05`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@bae5675...d3bac05) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump spec_tests/hed-specification from `d3bac05` to `abc9923` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `d3bac05` to `abc9923`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@d3bac05...abc9923) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Fixed error handling when definition has no groups * Added SCORE 2.0.0 to schema cache * Bump spec_tests/hed-specification from `abc9923` to `f633de5` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `abc9923` to `f633de5`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@abc9923...f633de5) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Fixed value tests * Added support for alternate codes in the spec_tests * Updated project .toml to include json class_regex * Bump spec_tests/hed-specification from `f633de5` to `62dbcb0` Bumps [spec_tests/hed-specification](https://github.com/hed-standard/hed-specification) from `f633de5` to `62dbcb0`. - [Release notes](https://github.com/hed-standard/hed-specification/releases) - [Commits](hed-standard/hed-specification@f633de5...62dbcb0) --- updated-dependencies: - dependency-name: spec_tests/hed-specification dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump spec_tests/hed-examples from `ba86a84` to `f117c4d` Bumps [spec_tests/hed-examples](https://github.com/hed-standard/hed-examples) from `ba86a84` to `f117c4d`. - [Release notes](https://github.com/hed-standard/hed-examples/releases) - [Commits](hed-standard/hed-examples@ba86a84...f117c4d) --- updated-dependencies: - dependency-name: spec_tests/hed-examples dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Minor updates to test files * outputting the workspace temporarily * Cleaned up some of the lints * Updated the actions, did test cleanup * Separated coverage action from just tests * Updated the tests for remodel * Corrected continue-on-error placement * Updated spec_tests path * Updated gitactions --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: IanCa <[email protected]> Co-authored-by: IanCa <[email protected]>
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