Adding a check in the less than method for the VariantCall class to ensure that in cases where there is a mix of arrays and scalar values that the comparison still works. #701
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…nsure that in cases where there is a mix of arrays and scalar values that the comparison still works
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Adding a check in the less than method for the VariantCall class to ensure that in cases where there is a mix of arrays and scalar values that the comparison still works.
When running bq_to_vcf the lt method in VariantCall was attempting to compare a list to a single value (-1) that is getting set by using the MISSING_GENOTYPE_VALUE (set to -1) in the densify_variants._densify_variants method. This was causing an exception to occur.
Test:
Added a unit test and ran a test manually on a dataset that was receiving the error mentioned above to make sure the bq_to_vcf could successfully generate a VCF file.