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fix(segment properties): fix negative constraints on numeric properties #1176

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fix(segment properties): fix negative constraints on numeric properties

fix(segment properties): fix negative constraints on numeric properties #1176

Workflow file for this run

.github/workflows/build.yml at 8634bfb
name: Build
on:
push:
branches:
- master
tags:
- v**
pull_request:
jobs:
client:
strategy:
matrix:
os:
- "ubuntu-latest"
- "windows-latest"
- "macos-latest"
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
with:
# Need full history to determine version number.
fetch-depth: 0
- uses: actions/setup-node@v4
with:
node-version: 20.x
cache: "npm"
cache-dependency-path: |
package-lock.json
examples/**/package-lock.json
- run: npm install
- run: npm run format:fix
- name: Check for dirty working directory
run: git diff --exit-code
- run: npm run lint:check
- name: Typecheck with TypeScript
run: npm run typecheck
- name: Build client bundles
run: |
build_info="{'tag':'$(git describe --always --tags)', 'url':'https://github.com/google/neuroglancer/commit/$(git rev-parse HEAD)', 'timestamp':'$(date)'}"
npm run build -- --no-typecheck --no-lint --define NEUROGLANCER_BUILD_INFO="${build_info}"
echo $build_info > ./dist/client/version.json
shell: bash
- name: Build Python client bundles
run: npm run build-python -- --no-typecheck --no-lint
- run: npm run build-package
- run: npm publish --dry-run
working-directory: dist/package
- uses: ./.github/actions/setup-firefox
- name: Run JavaScript tests (including WebGL)
run: npm test
if: ${{ runner.os != 'macOS' }}
- name: Run JavaScript tests (excluding WebGL)
run: npm test -- --project node
if: ${{ runner.os == 'macOS' }}
- name: Run JavaScript benchmarks
run: npm run benchmark
- name: Upload NPM package as artifact
uses: actions/upload-artifact@v4
with:
name: npm-package
path: dist/package
if: ${{ runner.os == 'Linux' }}
- name: Upload client as artifact
uses: actions/upload-artifact@v4
with:
name: client
path: dist/client
if: ${{ runner.os == 'Linux' }}
# Builds Python package and runs Python tests
#
# On ubuntu-latest, this also runs browser-based tests. On Mac OS and
# Windows, this only runs tests that do not require a browser, since a working
# headless WebGL2 implementation is not available on Github actions.
python-tests:
strategy:
matrix:
python-version:
- "3.9"
- "3.12"
os:
- "ubuntu-latest"
- "windows-latest"
- "macos-latest"
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
with:
# Need full history to determine version number.
fetch-depth: 0
- uses: actions/setup-node@v4
with:
node-version: 20.x
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
# Uncomment the action below for an interactive shell
# - name: Setup tmate session
# uses: mxschmitt/action-tmate@v3
- name: Install Python packaging/test tools
run: pip install tox nox wheel numpy -r python/requirements-test.txt
- uses: ./.github/actions/setup-firefox
- run: nox -s lint format mypy
- name: Check for dirty working directory
run: git diff --exit-code
- name: Test with tox
run: tox -e ${{ fromJSON('["skip-browser-tests","firefox-xvfb"]')[runner.os == 'Linux'] }}
# Verify that editable install works
- name: Install in editable form
run: pip install -e . --config-settings editable_mode=strict
- name: Run Python tests against editable install (excluding WebGL)
working-directory: python/tests
run: pytest -vv --skip-browser-tests
python-build-package:
strategy:
matrix:
include:
- os: "ubuntu-latest"
cibw_build: "*"
wheel_identifier: "linux"
- os: "windows-latest"
cibw_build: "*"
wheel_identifier: "windows"
- os: "macos-14"
cibw_build: "*_x86_64"
wheel_identifier: "macos_x86_64"
- os: "macos-14"
cibw_build: "*_arm64"
wheel_identifier: "macos_arm64"
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
with:
# Need full history to determine version number.
fetch-depth: 0
- uses: actions/setup-node@v4
with:
node-version: 20.x
cache: "npm"
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.x
- name: Get pip cache dir
id: pip-cache
run: |
echo "dir=$(pip cache dir)" >> "$GITHUB_OUTPUT"
- run: npm install
- run: |
build_info="{'tag':'$(git describe --always --tags)', 'url':'https://github.com/google/neuroglancer/commit/$(git rev-parse HEAD)', 'timestamp':'$(date)'}"
npm run build-python -- --no-typecheck --no-lint --define NEUROGLANCER_BUILD_INFO="${build_info}"
shell: bash
- name: Check for dirty working directory
run: git diff --exit-code
- name: Install setuptools
run: pip install setuptools
- name: Build Python source distribution (sdist)
run: python setup.py sdist --format gztar
if: ${{ runner.os == 'Linux' }}
- name: Install cibuildwheel
run: pip install cibuildwheel
- name: Build Python wheels
run: bash -xve ./python/build_tools/cibuildwheel.sh
env:
# On Linux, share pip cache with manylinux docker containers
CIBW_ENVIRONMENT_LINUX: PIP_CACHE_DIR=/host${{ steps.pip-cache.outputs.dir }}
CIBW_BEFORE_ALL_LINUX: /project/python/build_tools/cibuildwheel_linux_cache_setup.sh /host${{ steps.pip-cache.outputs.dir }}
CIBW_BUILD: ${{ matrix.cibw_build }}
- name: Upload wheels as artifacts
uses: actions/upload-artifact@v4
with:
name: python-wheels-${{ matrix.wheel_identifier }}
path: |
dist/*.whl
dist/*.tar.gz
docs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Setup Graphviz
uses: ts-graphviz/setup-graphviz@b1de5da23ed0a6d14e0aeee8ed52fdd87af2363c # v2.0.2
with:
macos-skip-brew-update: "true"
- name: Install nox
run: pip install nox
- name: Build docs
run: nox -s docs
- name: Upload docs as artifact
uses: actions/upload-artifact@v4
with:
name: docs
path: |
dist/docs
publish-package:
# Only publish package on push to tag or default branch.
if: ${{ github.event_name == 'push' && (startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/master') }}
runs-on: ubuntu-latest
needs:
- "client"
- "python-build-package"
- "docs"
steps:
- uses: actions/checkout@v4
- name: Use Node.js
uses: actions/setup-node@v4
with:
node-version: 20.x
registry-url: "https://registry.npmjs.org"
- uses: actions/download-artifact@v4
with:
pattern: python-wheels-*
path: dist
merge-multiple: true
- uses: actions/download-artifact@v4
with:
name: npm-package
path: npm-package
# - name: Publish to PyPI (test server)
# uses: pypa/gh-action-pypi-publish@54b39fb9371c0b3a6f9f14bb8a67394defc7a806 # 2020-09-25
# with:
# user: __token__
# password: ${{ secrets.pypi_test_token }}
- name: Publish to PyPI (main server)
uses: pypa/gh-action-pypi-publish@54b39fb9371c0b3a6f9f14bb8a67394defc7a806 # 2020-09-25
with:
user: __token__
password: ${{ secrets.pypi_token }}
if: ${{ startsWith(github.ref, 'refs/tags/v') }}
- name: Publish to NPM registry
if: ${{ startsWith(github.ref, 'refs/tags/v') }}
run: npm publish
working-directory: npm-package
env:
NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
# Download dist/client after publishing to PyPI, because PyPI publish
# action fails if dist/client directory is present.
- uses: actions/download-artifact@v4
with:
name: client
path: dist/client
- name: Publish client to Firebase hosting
uses: FirebaseExtended/action-hosting-deploy@v0
with:
firebaseServiceAccount: "${{ secrets.FIREBASE_HOSTING_SERVICE_ACCOUNT_KEY }}"
projectId: neuroglancer-demo
channelId: live
target: app
# Download dist/docs after publishing to PyPI, because PyPI publish
# action fails if dist/docs directory is present.
- uses: actions/download-artifact@v4
with:
name: docs
path: dist/docs
- name: Publish docs to Firebase hosting
uses: FirebaseExtended/action-hosting-deploy@v0
with:
firebaseServiceAccount: "${{ secrets.FIREBASE_HOSTING_SERVICE_ACCOUNT_KEY }}"
projectId: neuroglancer-demo
channelId: live
target: docs
ngauth:
strategy:
matrix:
os:
- ubuntu-latest
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- name: Setup go
uses: actions/setup-go@v5
with:
go-version-file: ngauth_server/go.mod
cache-dependency-path: ngauth_server/go.sum
- run: go build .
working-directory: ngauth_server
wasm:
# Ensures that .wasm files are reproducible.
strategy:
matrix:
os:
- ubuntu-latest
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- run: ./src/mesh/draco/build.sh
- run: ./src/sliceview/compresso/build.sh
- run: ./src/sliceview/png/build.sh
- run: ./src/sliceview/jxl/build.sh
# Check that there are no differences.
- run: git diff --exit-code