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tiff_findoof
Gabriele Girelli edited this page Aug 23, 2018
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Identifies the out-of-focus images in a folder. The script supports both a slice intensity integral (default) and gradient magnitude (-G
) modes.
Plotting can be enabled with the -P
parameter.
If -R
is specified, .old
is appended to the filename of out-of-focus images.
The script checks all images in the input folder that match the specified --pattern
. Use --range
to change the in-focus definition.
Run tiff_findoof -h
for more details on how to quickly identify out of focus fields of view.
pygpseq v3.3.4
is published under the MIT License - Copyright (c) 2017-18 Gabriele Girelli
- Introduction
- Installation
- GPSeq image analysis
- GPSeq FISH analysis
- TIFF tools
- F.A.Q.
- Contributing