another fix on variables in the new run.sh; for #12

docker-vars.yaml

@@ -8,7 +8,7 @@ repo_map:
    amigo: master
 
 tag: latest
-minerva_tag: v6
+minerva_tag: v7
 
 # Ubuntu based image
 noctua_tag: v5

docker/Dockerfile.minerva

@@ -26,8 +26,9 @@ WORKDIR /app
 ENV JAVA_OPTS="-Xmx24G"
 ENV GOLR_SEED="http://golr-aux.geneontology.io/solr"
 ENV GOLR_LABELS="http://noctua-golr.berkeleybop.org"
+ENV RUN_DIR="/var/minerva"
 
-RUN echo -e "#!/bin/bash\nset -x\njava $JAVA_OPTS -cp /app/minerva-cli.jar org.geneontology.minerva.server.StartUpTool --use-golr-url-logging --use-request-logging --arachne -g http://skyhook.berkeleybop.org/go-lego-reacto.owl --set-important-relation-parent http://purl.obolibrary.org/obo/LEGOREL_0000000 --port 6800 --golr-labels $GOLR_LABELS  --golr-seed $GOLR_SEED --ontojournal $1/blazegraph-go-lego-reacto-neo.jnl -f $1/blazegraph.jnl --export-folder $1/noctua-models/models\n" > /app/run.sh
+RUN echo -e "#!/bin/bash\nset -x\njava $JAVA_OPTS -cp /app/minerva-cli.jar org.geneontology.minerva.server.StartUpTool --use-golr-url-logging --use-request-logging --arachne -g http://skyhook.berkeleybop.org/go-lego-reacto.owl --set-important-relation-parent http://purl.obolibrary.org/obo/LEGOREL_0000000 --port 6800 --golr-labels $GOLR_LABELS  --golr-seed $GOLR_SEED --ontojournal $RUN_DIR/blazegraph-go-lego-reacto-neo.jnl -f $RUN_DIR/blazegraph.jnl --export-folder $RUN_DIR/noctua-models/models\n" > /app/run.sh
 
 RUN groupadd -g ${gid} gunicorn \
     && useradd -u ${uid} -g ${gid} -c 'Gunicorn User' --no-create-home gunicorn \
@@ -40,4 +41,4 @@ COPY --chown=${uid}:${gid} --from=builder /minerva-cli/bin/minerva-cli.jar /app/
 
 EXPOSE 6800
 USER gunicorn
-CMD ["/app/run.sh", "/var/minerva"]
+CMD ["/app/run.sh"]