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CNMFE notebook update #1207

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merged 13 commits into from
Jan 25, 2024
Merged

CNMFE notebook update #1207

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df8efef
rough draft, added cnmfe workflow diagram
EricThomson Oct 19, 2023
2dda754
added discussion of background model and initialization
EricThomson Oct 20, 2023
886a73c
updated corr/pnr notebook visualization
EricThomson Oct 20, 2023
4dbb740
finished first very rough draft of revised cnmfe notebook
EricThomson Oct 21, 2023
effef63
finished initial draft
EricThomson Oct 22, 2023
ac5c944
updated descriptions of movies at end
EricThomson Oct 24, 2023
ab95832
updated based on review
EricThomson Oct 30, 2023
9b5de27
updating while working on workshop materials
EricThomson Nov 5, 2023
4176a6e
fix issue 1222
EricThomson Dec 14, 2023
12fd3a6
clean up notebook, trim words
EricThomson Dec 15, 2023
3315037
minor edits to cnmfe notebook
EricThomson Dec 15, 2023
cee6fc8
through notebook fixing minor things
EricThomson Jan 23, 2024
3adb23d
updated description of movie source
EricThomson Jan 24, 2024
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2 changes: 1 addition & 1 deletion caiman/base/movies.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2553,7 +2553,7 @@ def view(button):
if save_movie:
if frame.ndim < 3:
frame = np.repeat(frame[:, :, None], 3, axis=-1)
frame = np.minimum((frame * 255.), 255).astype('u1')
frame = frame.astype('u1')
out.write(frame)
if backend == 'opencv' and (cv2.waitKey(int(1. / fr * 1000)) & 0xFF == ord('q')):
looping = False
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