Identifying novel pseudo-interfaces in protein cores.

By Yotam Constantini and Eyal Perry.

Identifying novel interface templates by examining the interior structure of resolved proteins.

Project details

https://github.com/eyalperry88/pseudo-interfaces/blob/master/Pseudo-interfaces_project_paper.pdf

Dependencies:

• Python 2.7
• BioPython 1.65
• DSSP

How to run

python pinterface_finder.py [--sd 94.0] [--core] path_to_pdb num_of_results

• path_to_pdb - relative path of the PDB file
• num_of_results - amount of templates to output
• sd - SD threshold, see paper
• core - for PDBs containing more than one chain, thi will output only pseudo-interfaces appearing on one single chain.