add raw time series data

epistorm · Sep 25, 2024 · a31dbbb · a31dbbb
1 parent 2a5123c
commit a31dbbb
Show file tree

Hide file tree

Showing 5 changed files with 33 additions and 13 deletions.
diff --git a/synthetic_gleam_data/California_raw_timeseries.csv.gz b/synthetic_gleam_data/California_raw_timeseries.csv.gz
diff --git a/synthetic_gleam_data/Massachusetts_raw_timeseries.csv.gz b/synthetic_gleam_data/Massachusetts_raw_timeseries.csv.gz
diff --git a/synthetic_gleam_data/North_Carolina_raw_timeseries.csv.gz b/synthetic_gleam_data/North_Carolina_raw_timeseries.csv.gz
diff --git a/synthetic_gleam_data/file-info.txt b/synthetic_gleam_data/file-info.txt
@@ -0,0 +1,33 @@
+Link to model slide deck: https://docs.google.com/presentation/d/1Gzv7R-z6Ej8T7H7_MF_1rtovhgz-jdpEjK_RoLnd-OU/edit?usp=sharing
+
+{state_name}_line_list.csv.gz
+The line list files report the hospitalizations of a synthetic epidemic across 3 locations (California, North Carolina and Massachusetts).
+
+There are 10 stochastic realizations for each state.
+
+Columns
+-run_id: stochastic realization id
+-indiv_idx: individual id
+-state_name
+-county_full_name
+-infection_date: Date of infection (S-->L)
+-hospitalization_date: Date of hospitalization 
+-reporting_date: Date the hospitalization was reported in the reporting system.
+
+-----------------------------------------------
+
+{state_name}_raw_timeseries
+The time series files of the SLIR model simulation of a synthetic epidemic across 3 locations (California, North Carolina and Massachusetts).
+
+There are 10 stochastic realizations for each state/county.
+
+Columns
+-run_id: stochastic realization id
+-state_name
+-county_full_name
+-date
+-population
+-geoid: county id
+-new_{compartment_name}: daily number of new transitions into that compartment. new_Latent: number of S->L transitions on that day
+
+
diff --git a/synthetic_gleam_data/linelist-data-info.txt b/synthetic_gleam_data/linelist-data-info.txt