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[package] | ||
name = "ga4gh-sdk" | ||
version = "0.1.0" | ||
authors = ["Aarav Mehta <[email protected]>", "ELIXIR Cloud & AAI <[email protected]>", "GENXT <[email protected]>"] | ||
authors = ["Aarav Mehta <[email protected]>", "Pavel Nikonorov", "ELIXIR Cloud & AAI <[email protected]>"] | ||
edition = "2021" | ||
description = "Generic SDK and CLI for GA4GH API services" | ||
license = "Apache-2.0" | ||
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# A folder for adding the files being used in unit tests | ||
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grape.tes: a sample file containing JSON task data for the GA4GH [Task Execution Service](https://github.com/ga4gh/task-execution-schemas) in the file lib/src/tes/mod.rs. Notably, it has placeholders like "${AWS_ACCESS_KEY_ID}" which is out of the standard and implies implementing a pre-processor, might be useful to note and implement in future as it avoids storing credentials in such .tes files | ||
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sample.tes: This is a sample file, taken from the [funnel docs](https://ohsu-comp-bio.github.io/funnel/docs/tasks/), and this file is being used in the file lib/src/tes/mod.rs | ||
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grape.tes: a sample file containing JSON task data for the GA4GH [Task Execution Service](https://github.com/ga4gh/task-execution-schemas), which can be used in the file lib/src/tes/mod.rs instead of sample.tes. Notably, it has placeholders like "${AWS_ACCESS_KEY_ID}" which is out of the standard and implies implementing a pre-processor, might be useful to note and implement in future as it avoids storing credentials in such .tes files |
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{ | ||
"name": "Hello world", | ||
"inputs": [{ | ||
"url": "s3://funnel-bucket/hello.txt", | ||
"path": "/inputs/hello.txt" | ||
}], | ||
"outputs": [{ | ||
"url": "s3://funnel-bucket/output.txt", | ||
"path": "/outputs/stdout" | ||
}], | ||
"executors": [{ | ||
"image": "alpine", | ||
"command": ["cat", "/inputs/hello.txt"], | ||
"stdout": "/outputs/stdout" | ||
}] | ||
} |