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ekatrukha authored Aug 6, 2024
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[![logo](./logo/bigtrace_logo_dark_150.png)](https://github.com/ekatrukha/BigTrace#gh-dark-mode-only)
[![logo](./logo/bigtrace_logo_light_150.png)](https://github.com/ekatrukha/BigTrace#gh-light-mode-only)

<a href="https://fiji.sc/">FIJI</a> plugin for tracing and analysis of curvilinear structures
in large (and small) volumetric microscopy datasets
using <a href="https://github.com/ekatrukha/bvv-playground">BigVolumeViewer</a> modification for visualization.
Tracing and analysis of curvilinear structures in 3D + time (filaments, cilia, vessels, neurites, bones, etc).
BigTrace is a plugin for [FIJI](https://fiji.sc/), using [imglib2](https://imagej.net/libs/imglib2/) library and [BigVolumeViewer](https://forum.image.sc/t/bigvolumeviewer-tech-demo/12104) ([fork](https://github.com/ekatrukha/bvv-playground)).
It works with images larger than RAM, reads proprietary formats,
can perform dataset transforms, and is scriptable.
<br />
For full description and manual refer to <a href="https://github.com/ekatrukha/BigTrace/wiki"><strong>Wiki page</strong></a>.
<br />
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