Merge pull request #11 from ecmwf-projects/ensure-dask-uses-threads_C… #40
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| name: on-push | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - uses: pre-commit/[email protected] | |
| unit-tests: | |
| name: unit-tests (3.10) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download CDM tables | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ecmwf-projects/cads-obs-common_data_model | |
| ref: 'cadsobs-changes' | |
| path: common_data_model | |
| - name: Deploy test ingestion database | |
| env: | |
| TEST_INGESTION_DB_PASS: ${{ secrets.TEST_INGESTION_DB_PASS }} | |
| CATALOGUE_PASSWORD: ${{ secrets.CATALOGUE_PASSWORD}} | |
| STORAGE_PASSWORD: ${{ secrets.STORAGE_PASSWORD}} | |
| STORAGE_SECRET_KEY: ${{ secrets.STORAGE_SECRET_KEY}} | |
| timeout-minutes: 2 | |
| run: | | |
| cd tests/docker/ | |
| wget -nv -O docker-entrypoint-initdb.d/test_ingestiondb.sql https://cloud.predictia.es/s/R9a6z8fBZQcPrAQ/download | |
| touch .env | |
| echo TEST_INGESTION_DB_PASS=$TEST_INGESTION_DB_PASS >> .env | |
| echo CATALOGUE_PASSWORD=$CATALOGUE_PASSWORD >> .env | |
| echo STORAGE_PASSWORD=$STORAGE_PASSWORD >> .env | |
| docker-compose up -d | |
| until pg_isready -U user -d baron -p 25432 -h localhost; do sleep 2; done | |
| - name: Download test netCDFs | |
| timeout-minutes: 2 | |
| run: | | |
| cd tests/data | |
| wget -nv -O test_netcdfs.tar.gz https://cloud.predictia.es/s/7QzpBEaYyiZ3o6C/download | |
| mkdir cuon_data && tar xzf test_netcdfs.tar.gz -C cuon_data/ | |
| rm test_netcdfs.tar.gz | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: environment.yml | |
| environment-name: DEVELOP | |
| channels: conda-forge | |
| cache-env: true | |
| extra-specs: | | |
| python=3.10 | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Run tests | |
| env: | |
| TEST_INGESTION_DB_PASS: ${{ secrets.TEST_INGESTION_DB_PASS }} | |
| STORAGE_PASSWORD: ${{ secrets.STORAGE_PASSWORD}} | |
| CATALOGUE_DB: ${{ secrets.CATALOGUE_DB}} | |
| CATALOGUE_HOST: ${{ secrets.CATALOGUE_HOST}} | |
| CATALOGUE_PASSWORD: ${{ secrets.CATALOGUE_PASSWORD}} | |
| CATALOGUE_PORT: ${{ secrets.CATALOGUE_PORT}} | |
| CATALOGUE_USER: ${{ secrets.CATALOGUE_USER}} | |
| STORAGE_ACCESS_KEY: ${{ secrets.STORAGE_ACCESS_KEY}} | |
| STORAGE_HOST: ${{ secrets.STORAGE_HOST}} | |
| STORAGE_PORT: ${{ secrets.STORAGE_PORT}} | |
| STORAGE_SECRET_KEY: ${{ secrets.STORAGE_SECRET_KEY}} | |
| STORAGE_SECURE: ${{ secrets.STORAGE_SECURE}} | |
| CDM_TABLES_LOCATION: ${{ github.workspace }} | |
| run: | | |
| ls ${GITHUB_WORKSPACE}/common_data_model/* | |
| make unit-tests COV_REPORT=xml | |
| type-check: | |
| needs: [unit-tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/provision-with-micromamba@v12 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: DEVELOP | |
| channels: conda-forge | |
| cache-env: true | |
| extra-specs: | | |
| python=3.10 | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Run code quality checks | |
| run: | | |
| make type-check | |
| docs-build: | |
| needs: [unit-tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: environment.yml | |
| environment-name: DEVELOP | |
| channels: conda-forge | |
| cache-env: true | |
| extra-specs: | | |
| python=3.10 | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Build documentation | |
| run: | | |
| make docs-build |