GitHub - dozy/npg_tracking: WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

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WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

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Name		Name	Last commit message	Last commit date
Latest commit History 225 Commits
bin		bin
cgi-bin		cgi-bin
data		data
htdocs		htdocs
lib		lib
scripts		scripts
t		t
wtsi_local		wtsi_local
.gitignore		.gitignore
Build.PL		Build.PL
Changes		Changes
INSTALL		INSTALL
MANIFEST		MANIFEST
Makefile.PL.WEB		Makefile.PL.WEB
README		README
REDESIGN_PROPOSAL		REDESIGN_PROPOSAL

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Illumina (Hiseq, MiSeq, GA) Sequencing Instruments Tracking
===========================================================

lib directory:
---------------
 npg::          - web application
 npg_tracking:: - general definition
                  access to genomic references and other reference data
                  API for extended Illumina rundolder structure
                  DBIx binding to the tracking database
 st::api::      - perl binding to LIMS XML feeds
 Monitor::      - monitoring runfolders on staging servers up to the analysis stage
 npg_testing::  - supplimentary modules for testing

bin directory:
--------------
 perl scripts

cgi-bin directory
-----------------
 cgi scripts for the web app

scripts
-------
 supplimentary scripts

htdocs directory:
-----------------
 images and client-side scripts for the web app

data directory:
---------------
 templates for the web app and some cron jobs
 db config file for the web app
 some icons
 Apache web server config file
 db schema dump

t directory:
------------
 tests
 test data
 supplimentary scripts and modules for testing