Converts mapped Geneious annotations saved as a .csv file into a .BED formatted tsv file for submission to the UCSC Human Genome Browser. Source code can be run within R studio or from a Windows batch file.
Requirements:
- Windows XP or later.
- Access to the ArkellLab Network (directories to the network are written within the source code).
- To run the windows batch file - R 3.4.3 (https://cran.r-project.org/bin/windows/base/old/3.4.3/) OR
- To run the source code - R studio (Available at: https://www.rstudio.com/) and R.3.4.3 or later (https://cran.r-project.org/bin/windows/base/).
- csv file containing Geneious annotations that have been mapped to the corresponding chromosome with the following columns selected (download example_annotations.csv for an example):
- Sequence Name
- Name
- Min (with gaps)
- Max (with gaps)