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1. qiime qiime Public

   Forked from biocore/qiime

   Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

   Python 1

2. dada2 dada2 Public

   Forked from benjjneb/dada2

   Accurate sample inference from amplicon data with single nucleotide resolution

   R

3. mbtools mbtools Public

   Forked from Gibbons-Lab/mbtools

   R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

   R

4. MEBS2 MEBS2 Public

   Forked from valdeanda/MEBS2

   HTML

5. microbiome microbiome Public

   Forked from resendislab/microbiome

   The standardized analysis pipeline used for analyzing 16S and metagenome data.

   R

6. microbiome_evolution microbiome_evolution Public

   Forked from benjaminhgood/microbiome_evolution

   Scripts for analyzing evolutionary dynamics in large cohorts of human gut metagenomes

   Python