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Mid 2019 release

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@joachimwolff joachimwolff released this 28 Jun 17:09
0.0.5
572c865
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Learn about vigilant mode.
  • Changing API to int64_t indptr, int64_t indices and float64 data as input from python.
  • Tested on GM12878 primary+replicate (data from Rao 2014) with HiCExplorer's hicCorrectMatrix, CPU 2x Intel(R) Xeon(R) CPU E5-2630 @ 2.20 GHz, 984 GB memory:
    • On 25kb resolution:
      • old implementation 57 min runtime, 159 GB memory
      • new implementation 1h 8 min runtime, 164 GB memory
    • On 10kb resolution
      • old implementation: > 984 GB of memory, machine run out of memory
      • new implementation: 1h 42 mins runtime, 225 GB memory
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