write pairix as dependency #12
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| name: Test | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| test-linux: | |
| name: Test on Linux | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.7" | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Use python ${{ matrix.python-version }} | |
| run: echo -e "\n - python = ${{ matrix.python-version }}" >> ./HiCMatrix_env_ci.yml | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: ./HiCMatrix_env_ci.yml | |
| cache-downloads: true | |
| environment-name: HiCMatrix_env_ci | |
| - name: pip install | |
| run: | | |
| python3 -m pip install . | |
| shell: micromamba-shell {0} | |
| - name: Test HiCMatrix | |
| run: | | |
| py.test hicmatrix/test/ --capture=sys | |
| shell: micromamba-shell {0} | |
| test-osx: | |
| name: Test on OSX | |
| runs-on: macOS-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Use python ${{ matrix.python-version }} | |
| run: echo -e "\n - python = ${{ matrix.python-version }}" >> ./HiCMatrix_env_ci.yml | |
| - uses: mamba-org/setup-micromamba@main | |
| with: | |
| environment-file: ./HiCMatrix_env_ci.yml | |
| cache-downloads: true | |
| environment-name: HiCMatrix_env_ci | |
| - name: pip install | |
| run: | | |
| python3 -m pip install . | |
| shell: micromamba-shell {0} | |
| - name: Test HiCMatrix | |
| run: | | |
| py.test hicmatrix/test/ --capture=sys | |
| shell: micromamba-shell {0} |