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MetaWorkflow Handler and MetaWorkflow Run Handler: Pipeline Automation #11
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Commits on Sep 28, 2022
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Commits on Oct 24, 2022
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Further editing of baseline MWF handler, with added functions for cal…
…culated attributes
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Creation of helper functions that may eventually be added to dcic utils.
Some are specific to the structure of CGAP portal schemas, but tried to generalize as much as possible. Also includes partial draft of dependency validation via topological sort.
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Commits on Oct 26, 2022
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Commits on Nov 1, 2022
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Commits on Nov 3, 2022
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Modified some tests, removed a few extraneous. Still need to finish t…
…ests for topological sort.
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Commits on Nov 4, 2022
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Refactored the utils functions for topological sort into its own file.
Resulted in edits within test files, including creation of a new test file for topological sort, and changes in imports for magma/metawfl_handler.py.
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Commits on Nov 9, 2022
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Added some pytests for topological sort.
Changes included additions of different directed graph global vars for testing -- tests for the topological sort on their way. Also removed function for creating "forward dependencies" -- this version of topological sort works with "backward dependencies".
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Commits on Nov 17, 2022
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Completed first draft of completed topological sort tests.
Addressed some prior comments. Future planned changes include creating a class for the topological sort function to decrease the number of command line arguments that are common among several functions.
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Small changes to utils -- mainly variable naming.
Also addressed some prior comments on draft.
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Commits on Nov 23, 2022
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Commits on Nov 28, 2022
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Commits on Jan 11, 2023
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Commits on Jan 13, 2023
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Finished ValidatedDictionary class
Changes included merging some former magma utils fxns into this class, and removing extraneous utils fxns. Also includes new test file for this class.
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Commits on Jan 20, 2023
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Refactored Topological Sort with TopologicalSorter from dcicutils.
Also wrote a draft of pytests
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Commits on Feb 6, 2023
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Further edits to basic handler classes
includes addition of custom Exception classes
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Commits on Feb 16, 2023
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Commits on Apr 21, 2023
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Commits on Apr 24, 2023
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More updates the mwfr handler creation
dbmi authored and dbmi committedApr 24, 2023 Configuration menu - View commit details
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Commits on May 3, 2023
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Commits on May 5, 2023
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Commits on May 8, 2023
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Added docstrings to MWF handler files and tests, and added to magma c…
…onstants. Got rid of duplication_flag.
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Commits on May 10, 2023
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Commits on May 16, 2023
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Commits on Jun 1, 2023
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Commits on Jun 24, 2023
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