Script to get bibliography for (all) dandisets (prototype) #1449
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sandbox/dandi.bib
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| # DANDISET 000029 | ||
| <!DOCTYPE html> |
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Ho ho -- we might be identifying problems for dandisets where we have releases and DOI minting has failed! someone might need to look into that!
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filed
Meanwhile will adjust script to skip those
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Additional details and impacted files@@ Coverage Diff @@
## master #1449 +/- ##
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+ Coverage 88.47% 88.54% +0.06%
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Files 77 78 +1
Lines 10518 10691 +173
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+ Hits 9306 9466 +160
- Misses 1212 1225 +13
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| url = {https://dandiarchive.org/dandiset/000404/0.230605.2024}, | ||
| author = {Athalye, Vivek R and Khanna, Preeya and Gowda, Suraj and Orsborn, Amy L and Costa, Rui M and Carmena, Jose M}, | ||
| keywords = {neural population dynamics, motor cortex, motor control, brain-machine interface, neuroprosthetics, optimal feedback control, motor commands, movement representations, dynamical systems}, | ||
| title = {Monkey 2D cursor BMI}, |
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apparently data.crosscite.org is not doing that great of a job here -- for BibTeX it ideally should have made it into
| title = {Monkey 2D cursor BMI}, | |
| title = {Monkey {2D} cursor {BMI}}, |
to prevent LaTeX lower casing them... now we just need to figure out where is that code to file a complaint :-/
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the easiest of cause IIRC is just to double {} it ie
| title = {Monkey 2D cursor BMI}, | |
| title = {{Monkey 2D cursor BMI}}, |
and in principle we could do that ourselves here after someone confirms that my concern here is correct
attn @TheChymera as who might know and @bendichter as who might care ;-)
| # for dandiset in [{'identifier': '000027', 'most_recent_published_version': | ||
| # {'version': '0.210831.2033'}}]: |
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Commented-out code Note
| datacite_records = [] | ||
| for m in metadata_records: | ||
| try: | ||
| datacite_record = to_datacite(m) |
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Potentially uninitialized local variable Error
| try: | ||
| datacite_record = to_datacite(m) | ||
| try: | ||
| validate_datacite(datacite_record) |
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Potentially uninitialized local variable Error
| datacite_record = to_datacite(m) | ||
| try: | ||
| validate_datacite(datacite_record) | ||
| except JSONValidationError as exc: |
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Potentially uninitialized local variable Error
| "schema_path": list(exc.schema_path), | ||
| } | ||
| datacite_errors[m["identifier"]].append(error_rec) | ||
| except ValidationError as exc: |
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| # OUTPUT Bibliography | ||
| try: | ||
| out = open(args.bibfile, "w") if args.bibfile else sys.stdout |
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a follow up to @bendichter 's
I think this is a viable prototype with some TODOs (provided in the script) for us to collate/update an ultimate DANDI bibliography (as bibtex). WDYT?
Also includes the
dandi.bibwhich script produced.Related: